18.9-Pflops nonlinear earthquake simulation on Sunway TaihuLight: enabling depiction of 18-Hz and 8-meter scenarios. - Haohuan Fu; Conghui He; Bingwei Chen; Zekun Yin; Zhenguo Zhang; Wenqiang Zhang; Tingjian Zhang; Wei Xue 003; Weiguo Liu; Wanwang Yin; Guangwen Yang; Xiaofei Chen (SC, 2017)

DGCF: A Distributed Greedy Clustering Framework for Large-scale Genomic Sequences. - Zekun Yin; Xiaoming Xu; Kaichao Fan; Ruilin Li; Weizhong Li 002; Weiguo Liu; Beifang Niu (BIBM, 2019)

Efficient Parallel Sort on AVX-512-Based Multi-Core and Many-Core Architectures. - Zekun Yin; Tianyu Zhang; André Müller; Hui Liu; Yanjie Wei; Bertil Schmidt; Weiguo Liu (HPCC/SmartCity/DSS, 2019)

XLCS: A New Bit-Parallel Longest Common Subsequence Algorithm on Xeon Phi Clusters. - Zekun Yin; Hao Zhang 142; Kai Xu; Yuandong Chan; Shaoliang Peng; Xiaoning Wang; Bertil Schmidt; Weiguo Liu (HPCC/SmartCity/DSS, 2019)

SLPal: Accelerating Long Sequence Alignment on Many-Core and Multi-Core Architectures. - Xiaoming Xu; Yuandong Chan; Kai Xu; Jikai Zhang; Xiaoning Wang; Zekun Yin; Weiguo Liu (BIBM, 2020)

RabbitMash: accelerating hash-based genome analysis on modern multi-core architectures. - Zekun Yin; Xiaoming Xu 004; Jinxiao Zhang; Yanjie Wei; Bertil Schmidt; Weiguo Liu (Bioinform., 2021)

RabbitQC: high-speed scalable quality control for sequencing data. - Zekun Yin; Hao Zhang 142; Meiyang Liu; Wen Zhang; Honglei Song; Haidong Lan; Yanjie Wei; Beifang Niu; Bertil Schmidt; Weiguo Liu (Bioinform., 2021)

RabbitQCPlus: More Efficient Quality Control for Sequencing Data. - Lifeng Yan; Zekun Yin; Hao Zhang 142; Zhan Zhao; Mingkai Wang; André Müller; Robin Kobus; Yanjie Wei; Beifang Niu; Bertil Schmidt; Weiguo Liu (BIBM, 2022)

RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures. - Hao Zhang 142; Qixin Chang; Zekun Yin; Xiaoming Xu 004; Yanjie Wei; Bertil Schmidt; Weiguo Liu (Bioinform., 2022)

Leveraging Data Density and Sparsity for Efficient SVM Training on GPUs. - Borui Xu; Zeyi Wen; Lifeng Yan; Zhan Zhao; Zekun Yin; Weiguo Liu; Bingsheng He (ICDM, 2023)

Ray-based Elastic Distributed Data Parallel Framework with Distributed Data Cache. - Haoran Lin; Xinwei Qin; Shuang Qiu; Yi Sun; Zekun Yin; Weiguo Liu (IPDPS Workshops, 2023)

69.7-PFlops Extreme Scale Earthquake Simulation with Crossing Multi-faults and Topography on Sunway. - Wubing Wan; Lin Gan; Wenqiang Wang; Zekun Yin; Haodong Tian; Zhenguo Zhang; Yinuo Wang; Mengyuan Hua; Xiaohui Liu; Shengye Xiang; Zhongqiu He; Zijia Wang; et al. (SC, 2023)

RabbitFX: Efficient Framework for FASTA/Q File Parsing on Modern Multi-Core Platforms. - Hao Zhang 142; Honglei Song; Xiaoming Xu 004; Qixin Chang; Mingkai Wang; Yanjie Wei; Zekun Yin; Bertil Schmidt; Weiguo Liu (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures. - Xiaoming Xu 004; Zekun Yin; Lifeng Yan; Huiguang Yi; Hua Wang; Bertil Schmidt; Weiguo Liu (Bioinform., 2023)

RabbitTrim: Highly Optimized Trimming of Illumina Sequencing Data on Multi-core Platforms. - Mingkai Wang; Zekun Yin; Lifeng Yan; Yang Yang; Fangjin Zhu; Xiaohui Duan; Xin Li; Bertil Schmidt; Weiguo Liu (ISBRA (2), 2024)

RabbitSAlign: Accelerating Short-Read Alignment for CPU-GPU Heterogeneous Platforms. - Lifeng Yan; Zekun Yin; Jinjin Li; Yang Yang; Tong Zhang; Fangjin Zhu; Xiaohui Duan; Bertil Schmidt; Weiguo Liu (ISBRA (2), 2024)

FastAttention: Extend FlashAttention2 to NPUs and Low-resource GPUs. - Haoran Lin; Xianzhi Yu; Kang Zhao; Lu Hou; Zongyuan Zhan; Stanislav Kamenev; Han Bao; Ting Hu; Mingkai Wang; Qixin Chang; Siyue Sui; Weihao Sun; et al. (CoRR, 2024)

O2ath: an OpenMP offloading toolkit for the sunway heterogeneous manycore platform. - Haoran Lin; Lifeng Yan; Qixin Chang; Haitian Lu; Chenlin Li; Quanjie He; Zeyu Song; Xiaohui Duan; Zekun Yin; Yuxuan Li; Zhao Liu; Wei Xue 003; et al. (CCF Trans. High Perform. Comput., 2024)

SWBWA: A Highly Efficient NGS Aligner on the New Sunway Architecture. - Lifeng Yan; Zekun Yin; Qixin Chang; Tong Zhang; Zhisong Wang; Xiaohui Duan; Bertil Schmidt; Weiguo Liu (Euro-Par (3), 2025)

SWQC: Efficient sequencing data quality control on the next-generation sunway platform. - Lifeng Yan; Zekun Yin; Tong Zhang; Fangjin Zhu; Xiaohui Duan; Bertil Schmidt; Weiguo Liu (Future Gener. Comput. Syst., 2025)

MMStencil: Optimizing High-order Stencils on Multicore CPU using Matrix Unit. - Yinuo Wang; Tianqi Mao; Lin Gan; Wubing Wan; Zeyu Song; Jiayu Fu; Lanke He; Wenqiang Wang; Zekun Yin; Wei Xue 003; Guangwen Yang (CoRR, 2025)