Using functional annotation to improve clusterings of gene expression patterns. - Per Jonsson; Kim Laurio; Zelmina Lubovac; Björn Olsson; Magnus L. Andersson (Inf. Sci., 2002)

Simulations of simple artificial genetic networks reveal features in the use of Relevance Networks. - Angelica Lindlöf; Zelmina Lubovac (Silico Biol., 2005)

Weighted Cohesiveness for Identification of Functional Modules and Their Interconnectivity. - Zelmina Lubovac; David Corne; Jonas Gamalielsson; Björn Olsson (BIRD, 2007)

Temporal Analysis of Oncogenesis Using MicroRNA Expression Data. - Thomas Zichner; Zelmina Lubovac; Björn Olsson (German Conference on Bioinformatics, 2008)

Network Properties for Ranking Predicted miRNA Targets in Breast Cancer. - Jörg Linde; Björn Olsson; Zelmina Lubovac (Adv. Bioinformatics, 2009)

Batch-normalization of cerebellar and medulloblastoma gene expression datasets utilizing empirically defined negative control genes. - Holger Weishaupt; Patrik Johansson; Anders Sundström; Zelmina Lubovac-Pilav; Björn Olsson; Sven Nelander; Fredrik J. Swartling (Bioinform., 2019)

miRFA: an automated pipeline for microRNA functional analysis with correlation support from TCGA and TCPA expression data in pancreatic cancer. - Emmy Borgmästars; Hendrik A. de Weerd; Zelmina Lubovac-Pilav; Malin Sund (BMC Bioinform., 2019)

MODifieR: an Ensemble R Package for Inference of Disease Modules from Transcriptomics Networks. - Hendrik A. de Weerd; Tejaswi V. S. Badam; David Martínez-Enguita; Julia Åkesson; Daniel Muthas; Mika Gustafsson; Zelmina Lubovac-Pilav (Bioinform., 2020)

ComHub: Community predictions of hubs in gene regulatory networks. - Julia Åkesson; Zelmina Lubovac-Pilav; Rasmus Magnusson; Mika Gustafsson (BMC Bioinform., 2021)

TFTenricher: a python toolbox for annotation enrichment analysis of transcription factor target genes. - Rasmus Magnusson; Zelmina Lubovac-Pilav (BMC Bioinform., 2021)

Latent space arithmetic on data embeddings from healthy multi-tissue human RNA-seq decodes disease modules. - Hendrik A. de Weerd; Dimitri Guala; Mika Gustafsson; Jane Synnergren; Jesper Tegnér; Zelmina Lubovac-Pilav; Rasmus Magnusson (Patterns, 2024)