Protein Structural Class Determination Using Support Vector Machines. - Zerrin Isik; Berrin A. Yanikoglu; Osman Ugur Sezerman (ISCIS, 2004)

Data and Model Driven Hybrid Approach to Activity Scoring of Cyclic Pathways. - Zerrin Isik; Volkan Atalay; Cevdet Aykanat; Rengül Çetin-Atalay (ISCIS, 2010)

Evaluation of Signaling Cascades Based on the Weights from Microarray and ChIP-seq Data. - Zerrin Isik; Volkan Atalay; Rengül Çetin-Atalay (MLSB, 2010)

Network structure based pathway enrichment system to analyze pathway activities ; Yolakların aktivitesinin analiz edilmesi için ağ tabanlı yolak zenginleştirme sistemi. - Zerrin Isik (2011)

GeneCloud: Secure Cloud Computing for Biomedical Research. - Martin Beck; V. Joachim Haupt; Janine Roy; Jan Mönnich; René Jäkel; Michael Schroeder 001; Zerrin Isik (Trusted Cloud Computing, 2014)

Privacy-Preserving Cloud Computing for Biomedical Research. - Martin Beck; V. Joachim Haupt; Janine Roy; Jan Mönnich; René Jäkel; Michael Schroeder 001; Zerrin Isik (Trusted Cloud Computing, 2014)

Network information improves cancer outcome prediction. - Janine Roy; Christof Winter; Zerrin Isik; Michael Schroeder 001 (Briefings Bioinform., 2014)

Classification of effects of drug combinations with support vector machines. - Ali Cuvitoglu; Zerrin Isik (SIU, 2017)

Integration of RNA-Seq and RPPA data for survival time prediction in cancer patients. - Zerrin Isik; Muserref Ece Ercan (Comput. Biol. Medicine, 2017)

Graph Theory Based Classification of Brain Connectivity Network for Autism Spectrum Disorder. - Ertan Tolan; Zerrin Isik (IWBBIO (1), 2018)

Character segmentation on natural images with graph-based representation. - Ali Koksal; Zerrin Isik (SIU, 2018)

Application of artificial neural networks in dementia and alzheimer's diagnosis. - Altug Yigit; Zerrin Isik (SIU, 2018)

Supervised Link Prediction Developed For Bipartite Social Networks. - Özge Kart; Emre Hayirci; Alp Kut 001; Zerrin Isik (ICAAI, 2019)

Predicting drug synergy for precision medicine using network biology and machine learning. - Ali Cuvitoglu; Joseph Xu Zhou; Sui Huang; Zerrin Isik (J. Bioinform. Comput. Biol., 2019)

The Analysis and Forecasting of Stock Price with Deep Learning. - Atakan Site; Zerrin Isik (SIU, 2020)

Applying deep learning models to structural MRI for stage prediction of Alzheimer's disease. - Altug Yigit; Zerrin Isik (Turkish J. Electr. Eng. Comput. Sci., 2020)

Compound Target Identification in Tissue-Specific Interaction Networks. - Feristah Dalkiliç; Zerrin Isik (IEEE Access, 2021)

Dementia diagnosis by ensemble deep neural networks using FDG-PET scans. - Altug Yigit; Yalin Bastanlar; Zerrin Isik (Signal Image Video Process., 2022)

Integrative Biological Network Analysis to Identify Shared Genes in Metabolic Disorders. - Samet Tenekeci; Zerrin Isik (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)