Wham: Identifying Structural Variants of Biological Consequence. - Zev N. Kronenberg; Edward J. Osborne; Kelsey R. Cone; Brett J. Kennedy; Eric T. Domyan; Michael D. Shapiro; Nels C. Elde; Mark Yandell (PLoS Comput. Biol., 2015)

A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar. - Erik Garrison; Zev N. Kronenberg; Eric T. Dawson; Brent S. Pedersen; Pjotr Prins (PLoS Comput. Biol., 2022)