Coupling between Catalytic Loop Motions and Enzyme Global Dynamics. - Zeynep Kurkcuoglu; Ahmet Bakan; Duygu Kocaman; Ivet Bahar; Pemra Doruker (PLoS Comput. Biol., 2012)

Substrate Effect on Catalytic Loop and Global Dynamics of Triosephosphate Isomerase. - Zeynep Kurkcuoglu; Pemra Doruker (Entropy, 2013)

Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2. - Zeynep Kurkcuoglu; Panagiotis I. Koukos; Nevia Citro; Mikael E. Trellet; João P. G. L. M. Rodrigues; Irina S. Moreira; Jorge Roel-Touris; Adrien S. J. Melquiond; Cunliang Geng; Jörg Schaarschmidt; Li C. Xue; Anna Vangone; et al. (J. Comput. Aided Mol. Des., 2018)

Understanding the Binding Specificity of G-Protein Coupled Receptors toward G-Proteins and Arrestins: Application to the Dopamine Receptor Family. - António J. Preto; Carlos A. V. Barreto; Salete J. Baptista; José G. de Almeida; Agostinho Lemos; André Melo; M. Natália Dias Soeiro Cordeiro; Zeynep Kurkcuoglu; Rita Melo; Irina S. Moreira (J. Chem. Inf. Model., 2020)