PepBDB: a comprehensive structural database of biological peptide-protein interactions. - Zeyu Wen; Jiahua He; Huanyu Tao; Sheng-You Huang (Bioinform., 2019)

Topology-independent and global protein structure alignment through an FFT-based algorithm. - Zeyu Wen; Jiahua He; Sheng-You Huang (Bioinform., 2020)

Accelerating Antimicrobial Peptide Discovery with Latent Sequence-Structure Model. - Danqing Wang; Zeyu Wen; Fei Ye; Hao Zhou 012; Lei Li 005 (CoRR, 2022)

Accelerating Antimicrobial Peptide Discovery with Latent Structure. - Danqing Wang; Zeyu Wen; Fei Ye; Lei Li 005; Hao Zhou 012 (KDD, 2023)

AbGraftBERT: Enhancing Antibody Design Through Self-Grafting and Amino Acid-Based Perturbation of Pre- Trained Language Models. - Ziheng Wang; Xinhe Li; Ying Xie; Zeyu Wen; Ruinian Jin; Hiroaki Takada; Ryoichi Nagatomi (IEEE Access, 2024)

A three-phase sheep optimization algorithm for numerical and engineering optimization problems. - Dapeng Qu; Rui Zhang; Shilin Peng; Zeyu Wen; Changjiu Yu; Rui Wang; Tianqi Yang; Yupeng Zhou (Expert Syst. Appl., 2024)