scTIM: seeking cell-type-indicative marker from single cell RNA-seq data by consensus optimization. - Zhan-Ying Feng; Xianwen Ren; Yuan Fang; Yining Yin; Chutian Huang; Yimin Zhao; Yong Wang 001 (Bioinform., 2020)

ELF: Extract Landmark Features By Optimizing Topology Maintenance, Redundancy, and Specificity. - Zhan-Ying Feng; Yong Wang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions. - Shengquan Chen; Qiao Liu 008; Xuejian Cui; Zhan-Ying Feng; Chunquan Li; Xiaowo Wang; Xuegong Zhang; Yong Wang; Rui Jiang 001 (Nucleic Acids Res., 2021)

Annotating regulatory elements by heterogeneous network embedding. - Yurun Lu; Zhan-Ying Feng; Songmao Zhang; Yong Wang 001 (Bioinform., 2022)