Tomato Expression Database (TED) - An Interactive Management Tool for Tomato Expression Profiling Data. - Zhangjun Fei; Xuemei Tang; Rob Alba; Paxton Payton; James J. Giovannoni (CSB, 2003)

Tomato Expression Database (TED): a suite of data presentation and analysis tools. - Zhangjun Fei; Xuemei Tang; Rob Alba; James J. Giovannoni (Nucleic Acids Res., 2006)

Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model. - Je-Gun Joung; Zhangjun Fei (Bioinform., 2009)

Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information. - Je-Gun Joung; Zhangjun Fei (BMC Bioinform., 2009)

iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences. - Yi Zheng; Liangjun Zhao; Junping Gao; Zhangjun Fei (BMC Bioinform., 2011)

Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics. - Zhangjun Fei; Je-Gun Joung; Xuemei Tang; Yi Zheng; Mingyun Huang; Je Min Lee; Ryan McQuinn; Denise M. Tieman; Rob Alba; Harry J. Klee; James J. Giovannoni (Nucleic Acids Res., 2011)

Fastq_clean: An optimized pipeline to clean the Illumina sequencing data with quality control. - Mi Zhang; Honghe Sun; Zhangjun Fei; Feng Zhan; Xiujun Gong; Shan Gao (BIBM, 2014)

Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics. - Junyang Yue; Jian Liu; Rongjun Ban; Wei Tang; Lin Deng; Zhangjun Fei; Yongsheng Liu (Database J. Biol. Databases Curation, 2015)

The Tomato Expression Atlas. - Noé Fernández-Pozo; Yi Zheng; Stephen I. Snyder; Philippe Nicolas; Yoshihito Shinozaki; Zhangjun Fei; Carmen Catala; James J. Giovannoni; Jocelyn K. C. Rose; Lukas A. Mueller (Bioinform., 2017)

SpinachBase: a central portal for spinach genomics. - Keeley Collins; Kun Zhao; Chen Jiao; Chenxi Xu; Xiaofeng Cai; Xiaoli Wang; Chenhui Ge; Shaojun Dai; Quanxi Wang; Quanhua Wang; Zhangjun Fei; Yi Zheng (Database J. Biol. Databases Curation, 2019)

Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops. - Yi Zheng; Shan Wu; Yang Bai; Honghe Sun; Chen Jiao; Shaogui Guo; Kun Zhao; Jose M. Blanca; Zhonghua Zhang; Sanwen Huang; Yong Xu; Yiqun Weng; et al. (Nucleic Acids Res., 2019)

CuGenDBv2: an updated database for cucurbit genomics. - Jingyin Yu; Shan Wu; Honghe Sun; Xin Wang; Xuemei Tang; Shaogui Guo; Zhonghua Zhang; Sanwen Huang; Yong Xu; Yiqun Weng; Michael Mazourek; Cecilia McGregor; et al. (Nucleic Acids Res., 2023)

Pattern Recognition of Partial Discharge Faults in Switchgear Using a Back Propagation Neural Network Optimized by an Improved Mantis Search Algorithm. - Zhangjun Fei; Yiying Li; Shiyou Yang (Sensors, 2024)