BiRen: predicting enhancers with a deep-learning-based model using the DNA sequence alone. - Bite Yang; Feng Liu 054; Chao Ren; Zhangyi Ouyang; Ziwei Xie; Xiaochen Bo; Wenjie Shu (Bioinform., 2017)

LIVE: a manually curated encyclopedia of experimentally validated interactions of lncRNAs. - Gaole An; Jiaqi Sun; Chao Ren; Zhangyi Ouyang; Lingyun Zhu; Xiaochen Bo; Shaoliang Peng; Wenjie Shu (Database J. Biol. Databases Curation, 2019)

Stratifying TAD boundaries pinpoints focal genomic regions of regulation, damage, and repair. - Bijia Chen; Chao Ren; Zhangyi Ouyang; Jingxuan Xu; Kang Xu; Yaru Li; Hejiang Guo; Xuemei Bai; Mengge Tian; Xiang Xu; Yuyang Wang; Hao Li 035; et al. (Briefings Bioinform., 2024)