Predicting microRNA-disease associations from knowledge graph using tensor decomposition with relational constraints. - Feng Huang 004; Zhankun Xiong; Guan Zhang; Zhouxin Yu; Xinran Xu; Wen Zhang 008 (CoRR, 2019)

Tensor decomposition with relational constraints for predicting multiple types of microRNA-disease associations. - Feng Huang 004; Xiang Yue; Zhankun Xiong; Zhouxin Yu; Shichao Liu 002; Wen Zhang 008 (Briefings Bioinform., 2021)

Predicting drug transcriptional response similarity using Signed Graph Convolutional Network. - Ziyan Wang; Chengzhi Hong; Xuan Liu; Zhankun Xiong; Feng Liu; Wen Zhang 008 (BIBM, 2022)

A heterogeneous network-based method with attentive meta-path extraction for predicting drug-target interactions. - Hongzhun Wang; Feng Huang 004; Zhankun Xiong; Wen Zhang 008 (Briefings Bioinform., 2022)

A Multimodal Framework for Improving in Silico Drug Repositioning With the Prior Knowledge From Knowledge Graphs. - Zhankun Xiong; Feng Huang 004; Ziyan Wang; Shichao Liu 002; Wen Zhang 008 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Multi-Relational Contrastive Learning Graph Neural Network for Drug-Drug Interaction Event Prediction. - Zhankun Xiong; Shichao Liu 002; Feng Huang 004; Ziyan Wang; Xuan Liu; Zhongfei Zhang; Wen Zhang 008 (AAAI, 2023)

Multi-view Contrastive Learning Hypergraph Neural Network for Drug-Microbe-Disease Association Prediction. - Luotao Liu; Feng Huang 004; Xuan Liu; Zhankun Xiong; Menglu Li; Congzhi Song; Wen Zhang 008 (IJCAI, 2023)

A Multi-Modal Contrastive Diffusion Model for Therapeutic Peptide Generation. - Yongkang Wang; Xuan Liu; Feng Huang 004; Zhankun Xiong; Wen Zhang 008 (AAAI, 2024)

ZeroDDI: A Zero-Shot Drug-Drug Interaction Event Prediction Method with Semantic Enhanced Learning and Dual-modal Uniform Alignment. - Ziyan Wang; Zhankun Xiong; Feng Huang 004; Xuan Liu; Wen Zhang 008 (IJCAI, 2024)

Heterogeneous Causal Metapath Graph Neural Network for Gene-Microbe-Disease Association Prediction. - Kexin Zhang; Feng Huang 004; Luotao Liu; Zhankun Xiong; Hongyu Zhang; Yuan Quan; Wen Zhang 008 (IJCAI, 2024)

Deep learning for drug-drug interaction prediction: A comprehensive review. - Xinyue Li; Zhankun Xiong; Wen Zhang 008; Shichao Liu 002 (Quant. Biol., 2024)

PKAG-DDI: Pairwise Knowledge-Augmented Language Model for Drug-Drug Interaction Event Text Generation. - Ziyan Wang; Zhankun Xiong; Feng Huang 004; Wen Zhang 008 (ACL (1), 2025)