A Molecular Multimodal Foundation Model Associating Molecule Graphs with Natural Language. - Bing Su 001; Dazhao Du; Zhao Yang 006; Yujie Zhou; Jiangmeng Li; Anyi Rao; Hao Sun 002; Zhiwu Lu 001; Ji-Rong Wen (CoRR, 2022)

Synthesizing Long-Term Human Motions with Diffusion Models via Coherent Sampling. - Zhao Yang 006; Bing Su 001; Ji-Rong Wen (ACM Multimedia, 2023)

Regulatory DNA Sequence Design with Reinforcement Learning. - Zhao Yang 006; Bing Su 001; Chuan Cao; Ji-Rong Wen (ICLR, 2025)

FlashRAG: A Modular Toolkit for Efficient Retrieval-Augmented Generation Research. - Jiajie Jin; Yutao Zhu 001; Zhicheng Dou; Guanting Dong; Xinyu Yang; Chenghao Zhang 001; Tong Zhao; Zhao Yang 006; Ji-Rong Wen (WWW (Companion Volume), 2025)

Interpretable Enzyme Function Prediction via Residue-Level Detection. - Zhao Yang 006; Bing Su 001; Jiahao Chen; Ji-Rong Wen (CoRR, 2025)

NatureLM: Deciphering the Language of Nature for Scientific Discovery. - Yingce Xia; Peiran Jin; Shufang Xie 003; Liang He 010; Chuan Cao; Renqian Luo; Guoqing Liu; Yue Wang 017; Zequn Liu; Yuan-Jyue Chen; Zekun Guo; Yeqi Bai; et al. (CoRR, 2025)

HybriDNA: A Hybrid Transformer-Mamba2 Long-Range DNA Language Model. - Mingqian Ma; Guoqing Liu; Chuan Cao; Pan Deng; Tri Dao; Albert Gu; Peiran Jin; Zhao Yang 006; Yingce Xia; Renqian Luo; Pipi Hu; Zun Wang; et al. (CoRR, 2025)

Enhancing Human Motion Prediction via Multi-range Decoupling Decoding with Gating-adjusting Aggregation. - Jiexin Wang; Wenwen Qiang; Zhao Yang 006; Bing Su 001 (CoRR, 2025)

Decoupled Planning and Execution: A Hierarchical Reasoning Framework for Deep Search. - Jiajie Jin; Xiaoxi Li; Guanting Dong; Yuyao Zhang; Yutao Zhu 001; Zhao Yang 006; Hongjin Qian; Zhicheng Dou (CoRR, 2025)