Accounting for Structural Properties and Nucleotide Co-variations in the Quantitative Prediction of Binding Affinities of Protein-DNA Interactions. - Sumedha Gunewardena; Zhaolei Zhang (Pacific Symposium on Biocomputing, 2006)

PseudoPipe: an automated pseudogene identification pipeline. - Zhaolei Zhang; Nicholas Carriero; Deyou Zheng; John E. Karro; Paul M. Harrison; Mark Gerstein (Bioinform., 2006)

Enhancing the Prediction of Transcription Factor Binding Sites by Incorporating Structural Properties and Nucleotide Covariations. - Sumedha Gunewardena; Peter Jeavons 001; Zhaolei Zhang (J. Comput. Biol., 2006)

Modifying kernels using label information improves SVM classification performance. - Martin Renqiang Min; Anthony J. Bonner; Zhaolei Zhang (ICMLA, 2007)

Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation. - John E. Karro; Yangpan Yan; Deyou Zheng; Zhaolei Zhang; Nicholas Carriero; Philip Cayting; Paul M. Harrison; Mark Gerstein (Nucleic Acids Res., 2007)

A hybrid model for robust detection of transcription factor binding sites. - Sumedha Gunewardena; Zhaolei Zhang (Bioinform., 2008)

MAID : An effect size based model for microarray data integration across laboratories and platforms. - Ivan Borozan; Limin Chen; Bryan Paeper; Jenny E. Heathcote; Aled M. Edwards; Michael G. Katze; Zhaolei Zhang; Ian D. McGilvray (BMC Bioinform., 2008)

A Deep Non-linear Feature Mapping for Large-Margin kNN Classification. - Martin Renqiang Min; David A. Stanley; Zineng Yuan; Anthony J. Bonner; Zhaolei Zhang (ICDM, 2009)

Learning Random-Walk Kernels for Protein Remote Homology Identification and Motif Discovery. - Martin Renqiang Min; Rui Kuang; Anthony J. Bonner; Zhaolei Zhang (SDM, 2009)

Large-Margin kNN Classification Using a Deep Encoder Network - Martin Renqiang Min; David A. Stanley; Zineng Yuan; Anthony J. Bonner; Zhaolei Zhang (CoRR, 2009)

A Probabilistic Framework to Improve microRNA Target Prediction by Incorporating Proteomics Data. - Jingjing Li; Martin Renqiang Min; Anthony J. Bonner; Zhaolei Zhang (J. Bioinform. Comput. Biol., 2009)

Learned Random-Walk Kernels and Empirical-Map Kernels for Protein Sequence Classification. - Renqiang Min; Anthony J. Bonner; Jingjing Li; Zhaolei Zhang (J. Comput. Biol., 2009)

Small RNAs Originated from Pseudogenes: cis- or trans-Acting? - Xingyi Guo; Zhaolei Zhang; Mark B. Gerstein; Deyou Zheng (PLoS Comput. Biol., 2009)

Deep Supervised t-Distributed Embedding. - Martin Renqiang Min; Laurens van der Maaten; Zineng Yuan; Anthony J. Bonner; Zhaolei Zhang (ICML, 2010)

MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore. - Jian Ren 002; Zexian Liu; Xinjiao Gao; Changjiang Jin; Mingliang Ye; Hanfa Zou; Longping Wen; Zhaolei Zhang; Yu Xue 001; Xuebiao Yao (Nucleic Acids Res., 2010)

Gene Expression Variability within and between Human Populations and Implications toward Disease Susceptibility. - Jingjing Li; Yu Liu 093; TaeHyung Kim; Renqiang Min; Zhaolei Zhang (PLoS Comput. Biol., 2010)

Differential effects of chromatin regulators and transcription factors on gene regulation: a nucleosomal perspective. - Dong Dong; Xiaojian Shao; Zhaolei Zhang (Bioinform., 2011)

Gene expression variations are predictive for stochastic noise. - Dong Dong; Xiaojian Shao; Naiyang Deng; Zhaolei Zhang (Nucleic Acids Res., 2011)

DAnCER: Disease-Annotated Chromatin Epigenetics Resource. - Andrei L. Turinsky; Brian Turner; Rosanne C. Borja; James A. Gleeson; Michael Heath; Shuye Pu; Thomas Switzer; Dong Dong; Yunchen Gong; Tuan On; Xuejian Xiong; Andrew Emili; et al. (Nucleic Acids Res., 2011)

Evolutionary multimodal optimization using the principle of locality. - Ka-Chun Wong; Chun-Ho Wu; Ricky K. P. Mok; Chengbin Peng; Zhaolei Zhang (Inf. Sci., 2012)

PhenoM: a database of morphological phenotypes caused by mutation of essential genes in Saccharomyces cerevisiae. - Ke Jin; Jingjing Li; Frederick S. Vizeacoumar; Zhijian Li; Renqiang Min; Lee Zamparo; Franco J. Vizeacoumar; Alessandro Datti; Brenda J. Andrews; Charles Boone; Zhaolei Zhang (Nucleic Acids Res., 2012)

A probabilistic approach to explore human miRNA targetome by integrating miRNA-overexpression data and sequence information. - Yue Li 017; Anna Goldenberg; Ka-Chun Wong; Zhaolei Zhang (Bioinform., 2014)

Mirsynergy: detecting synergistic miRNA regulatory modules by overlapping neighbourhood expansion. - Yue Li 017; Cheng Liang 001; Ka-Chun Wong; Jiawei Luo 001; Zhaolei Zhang (Bioinform., 2014)

SNPdryad: predicting deleterious non-synonymous human SNPs using only orthologous protein sequences. - Ka-Chun Wong; Zhaolei Zhang (Bioinform., 2014)

Regression Analysis of Combined Gene Expression Regulation in Acute Myeloid Leukemia. - Yue Li 017; Minggao Liang; Zhaolei Zhang (PLoS Comput. Biol., 2014)

A novel motif-discovery algorithm to identify co-regulatory motifs in large transcription factor and microRNA co-regulatory networks in human. - Cheng Liang 001; Yue Li 017; Jiawei Luo 001; Zhaolei Zhang (Bioinform., 2015)

SignalSpider: probabilistic pattern discovery on multiple normalized ChIP-Seq signal profiles. - Ka-Chun Wong; Yue Li 017; Chengbin Peng; Zhaolei Zhang (Bioinform., 2015)

Deep Autoencoders for Dimensionality Reduction of High-Content Screening Data. - Lee Zamparo; Zhaolei Zhang (CoRR, 2015)

Dimension Reduction on Open Data Using Variational Autoencoder. - Hyunmin Lee; Zhen Hao Wu; Zhaolei Zhang (ICDM Workshops, 2018)

基于区块链的身份管理认证研究 (Research on Identity Management Authentication Based on Blockchain). - Guishan Dong; Yuxiang Chen; Zhaolei Zhang; Jian Bai; Yao Hao (计算机科学, 2018)

An Open Identity Authentication Scheme Based on Blockchain. - Yuxiang Chen; Guishan Dong; Yao Hao; Zhaolei Zhang; Haiyang Peng; Shui Yu 001 (ICA3PP (1), 2019)

Tiger Tally: Cross-Domain Scheme for Different Authentication Mechanism. - Guishan Dong; Yuxiang Chen; Yao Hao; Zhaolei Zhang; Peng Zhang; Shui Yu 001 (ICA3PP (1), 2019)

A Unified Trust Service Scheme for Heterogeneous Identity Alliance. - Guishan Dong; Yuxiang Chen; Yao Hao; Jian Bai; Zhaolei Zhang; Sijie Liao (NaNA, 2020)

Application and Challenges of Blockchain in Heterogeneous Identity Trust. - Zhaolei Zhang; Jian Xu; Guishan Dong; Junyan Lin (BlockSys, 2021)

ProTICS reveals prognostic impact of tumor infiltrating immune cells in different molecular subtypes. - Shuhui Liu; Yupei Zhang; Xuequn Shang 001; Zhaolei Zhang (Briefings Bioinform., 2021)

Improving domain adaptation in de-identification of electronic health records through self-training. - Shun Liao; Jamie Kiros; Jiyang Chen; Zhaolei Zhang; Ting Chen (J. Am. Medical Informatics Assoc., 2021)

Firmware code instrumentation technology for internet of things-based services. - Chen Chen 061; Jinxin Ma; Tao Qi; Baojiang Cui; Weikong Qi; Zhaolei Zhang; Peng Sun (World Wide Web, 2021)

A Survey on Applications of Artificial Intelligence in Fighting Against COVID-19. - Jianguo Chen 001; Kenli Li 001; Zhaolei Zhang; Keqin Li 001; Philip S. Yu (ACM Comput. Surv., 2022)

A configurable deep learning framework for medical image analysis. - Jianguo Chen 001; Nan Yang; Mimi Zhou; Zhaolei Zhang; Xulei Yang (Neural Comput. Appl., 2022)

Inferring RNA-binding protein target preferences using adversarial domain adaptation. - Ying Liu 027; Ruihui Li; Jiawei Luo 001; Zhaolei Zhang (PLoS Comput. Biol., 2022)

RNANetMotif: Identifying sequence-structure RNA network motifs in RNA-protein binding sites. - Hongli Ma; Han Wen; Zhiyuan Xue; Guojun Li; Zhaolei Zhang (PLoS Comput. Biol., 2022)

Development of a Safety Prediction Method for Arterial Roads Based on Big-Data Technology and Stacked AutoEncoder-Gated Recurrent Unit. - Wei Hao 002; Donglei Rong; Zhaolei Zhang; Qiyu Wu 003; Young-Ji Byon; Kefu Yi; Jinjun Tang; Nengchao Lyu (IEEE Trans. Intell. Transp. Syst., 2022)

Channel Modeling and Characteristics Analysis under Different 3D Dynamic Trajectories for UAV-Assisted Emergency Communications. - Jingfan Zhang; Yu Liu 020; Jie Huang 004; Hengtai Chang; Zhaolei Zhang; Jingquan Li (Sensors, 2023)

Channel Characterization and Modeling for 6G UAV-Assisted Emergency Communications in Complicated Mountainous Scenarios. - Zhaolei Zhang; Yu Liu; Jie Huang; Jingfan Zhang; Jingquan Li; Ruisi He (Sensors, 2023)

Synchronous Medical Image Augmentation framework for deep learning-based image segmentation. - Jianguo Chen 001; Nan Yang; Yuhui Pan; Hailing Liu; Zhaolei Zhang (Comput. Medical Imaging Graph., 2023)

PmmNDD: Predicting the Pathogenicity of Missense Mutations in Neurodegenerative Diseases via Ensemble Learning. - Xijian Li; Ying Huang; Runxuan Tang; Guangcheng Xiao; Xiaochuan Chen; Ruilin He; Zhaolei Zhang; Jiana Luo; Yanjie Wei; Yijun Mao; Huiling Zhang (ISBRA (3), 2024)

Hardware Implementation of a Novel UAV Multi-Trajectory Dual-Mobility Channel Emulator. - Jingquan Li; Yu Liu 020; Jingfan Zhang; Zhaolei Zhang; Hengtai Chang; Jie Huang 004 (WCNC, 2024)

Editorial: Special Section on Challenges and Opportunities in Biomedical Big Data Analysis: From Large Language Models to Clinical Applications. - Yanjie Wei; Huiling Zhang; Zhipeng Cai 001; Fa Zhang 001; Zhaolei Zhang (Big Data Min. Anal., 2024)

Identification, isoform classification, ligand binding, and database construction of the protein-tyrosine sulfotransferase family in metazoans. - Xiaozhe Yi; Panpan Jin; Zhaolei Zhang; Erhuan Zang; Yu Tian; Xinyi Li; Jinxin Liu; Yunbo Wang; Linchun Shi (Comput. Biol. Medicine, 2024)

Modeling single cell trajectory using forward-backward stochastic differential equations. - Kevin Zhang; Junhao Zhu; Dehan Kong; Zhaolei Zhang (PLoS Comput. Biol., 2024)

Machine Learning Based Clustering and Modeling for 6G UAV-to-Ground Communication Channels. - Zhaolei Zhang; Yu Liu 020; Cheng-Xiang Wang 001; Hengtai Chang; Ji Bian; Jingfan Zhang (IEEE Trans. Veh. Technol., 2024)

scTrans: Sparse attention powers fast and accurate cell type annotation in single-cell RNA-seq data. - Zhiyi Zou; Ying Liu 027; Yuting Bai; Jiawei Luo 001; Zhaolei Zhang (PLoS Comput. Biol., 2025)