On accelerating iterative algorithms with CUDA: A case study on Conditional Random Fields training algorithm for biological sequence alignment. - Zhihui Du; Zhaoming Yin; Wenjie Liu; David A. Bader (BIBM Workshops, 2010)

A tile-based parallel Viterbi algorithm for biological sequence alignment on GPU with CUDA. - Zhihui Du; Zhaoming Yin; David A. Bader (IPDPS Workshops, 2010)

Streaming Breakpoint Graph Analytics for Accelerating and Parallelizing the Computation of DCJ Median of Three Genomes. - Zhaoming Yin; Jijun Tang; Stephen W. Schaeffer; David A. Bader (ICCS, 2013)

A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents. - Zhaoming Yin; Jijun Tang; Stephen W. Schaeffer; David A. Bader (COCOON, 2014)

Navigating the maze of graph analytics frameworks using massive graph datasets. - Nadathur Satish; Narayanan Sundaram; Md. Mostofa Ali Patwary; Jiwon Seo 002; Jongsoo Park; Muhammad Amber Hassaan; Shubho Sengupta; Zhaoming Yin; Pradeep Dubey (SIGMOD Conference, 2014)

Enhance the understanding of whole-genome evolution by designing, accelerating and parallelizing phylogenetic algorithms. - Zhaoming Yin (2014)

Exemplar or matching: modeling DCJ problems with unequal content genome data. - Zhaoming Yin; Jijun Tang; Stephen W. Schaeffer; David A. Bader (J. Comb. Optim., 2016)

Taming Near Repeat Calculation for Crime Analysis via Cohesive Subgraph Computing. - Zhaoming Yin; Xuan Shi (CoRR, 2017)

StreamNet: A DAG System with Streaming Graph Computing. - Zhaoming Yin; Anbang Ruan; Ming Wei; Huafeng Li; Kai Yuan; Junqing Wang; Yahui Wang; Ming Ni; Andrew P. Martin (CoRR, 2019)