RxnFinder: biochemical reaction search engines using molecular structures, molecular fragments and reaction similarity. - Qian-Nan Hu; Zhe Deng; Huanan Hu; Dong-Sheng Cao 001; Yi-Zeng Liang (Bioinform., 2011)

SynBioEcoli: a comprehensive metabolism network of engineered E. coli in three dimensional visualization. - Weizhong Tu; Shaozhen Ding; Ling Wu; Zhe Deng; Hui Zhu 004; Xiaotong Xu; Chen Lin; Chaonan Ye; Minlu Han; Mengna Zhao; Juan Liu 007; Zixin Deng; et al. (Quant. Biol., 2017)

PhID: An Open-Access Integrated Pharmacology Interactions Database for Drugs, Targets, Diseases, Genes, Side-Effects, and Pathways. - Zhe Deng; Weizhong Tu; Zixin Deng; Qian-Nan Hu (J. Chem. Inf. Model., 2017)

Self-Ensembling Co-Training Framework for Semi-Supervised COVID-19 CT Segmentation. - Caizi Li; Li Dong; Qi Dou 001; Fan Lin; Kebao Zhang; Zuxin Feng; Weixin Si; Xuesong Deng; Zhe Deng; Pheng-Ann Heng (IEEE J. Biomed. Health Informatics, 2021)

A Temporal Convolutional Network Based on Bayesian Optimization for Frequency Hopping Prediction. - Zhe Deng; Ke Lai; Jing Lei 001 (ICAIT, 2022)

Active Learning-Based Mobile Malware Detection Utilizing Auto-Labeling and Data Drift Detection. - Zhe Deng; Arthur Hubert; Sadok Ben Yahia; Hayretdin Bahsi (CSR, 2024)

Generative AI in Intrusion Detection Systems for Internet of Things: A Systematic Literature Review. - Zhe Deng; Ants Torim; Sadok Ben Yahia; Hayretdin Bahsi (IEEE Open J. Commun. Soc., 2025)

Lightweight skeleton-based action recognition model based on global-local feature extraction and fusion. - Zhe Deng; Yulin Wang; Xing Wei 002; Fan Yang 063; Chong Zhao; Yang Lu 015 (Int. J. Mach. Learn. Cybern., 2025)