Enabling precision medicine with CancerKB and KBCommons informatics framework. - Zhen Lyu; Shuai Zeng; Trupti Joshi (BIBM, 2017)

Development of "KBCommons" - universal informatics framework for multi-omics translational research. - Siva Ratna Kumari Narisetti; Shuai Zeng; Zhen Lyu; Trupti Joshi (BIBM, 2017)

SoyTSN: A web-based prediction tool for soybean tissue specific network within SoyKB. - Juexin Wang; Zhen Lyu; Shakhawat Hossain; Gary Stacey; Dong Xu 002; Trupti Joshi (BIBM, 2017)

KBCommons: A multi 'OMICS' integrative framework for database and informatics tools. - Shuai Zeng; Siva Ratna Kumari Narisetti; Zhen Lyu; Trupti Joshi (BIBM, 2017)

Knowledge Base Commons (KBCommons) v1.0: A multi OMICS' web-based data integration framework for biological discoveries. - Shuai Zeng; Zhen Lyu; Siva Ratna Kumari Narisetti; Dong Xu 002; Trupti Joshi (BIBM, 2018)

Mutational Forks: Inferring Deregulated Flow of Signal Transduction Based on Patient-Specific Mutations. - Olha Kholod; Zhen Lyu; Jonathan B. Mitchem; Peter J. Tonellato; Trupti Joshi; Dmitriy Shin (BIBM, 2019)

OnTimeURB: Multi-Cloud Resource Brokering for Bioinformatics Workflows. - Ashish Pandey; Zhen Lyu; Trupti Joshi; Prasad Calyam (BIBM, 2019)

Multi-Cloud Performance and Security-driven Brokering for Bioinformatics Workflows. - Minh Nguyen; Saptarshi Debroy; Prasad Calyam; Zhen Lyu; Trupti Joshi (ICNP, 2019)

A Formative Usability Study to Improve Prescriptive Systems for Bioinformatics Big Data. - Kanupriya Singh; Shangman Li; Isa Jahnke; Ashish Pandey; Zhen Lyu; Trupti Joshi; Prasad Calyam (BIBM, 2020)

SNPViz v2.0: A web-based tool for enhanced haplotype analysis using large scale resequencing datasets and discovery of phenotypes causative gene using allelic variations. - Shuai Zeng; Mária Skrabisová; Zhen Lyu; Yen On Chan; Kristin Bilyeu; Trupti Joshi (BIBM, 2020)

Security-aware Resource Brokering for Bioinformatics Workflows across Federated Multi-cloud Infrastructures. - Minh Nguyen; Saptarshi Debroy; Prasad Calyam; Zhen Lyu; Trupti Joshi (ICDCN, 2020)

Characterizing Label Errors: Confident Learning for Noisy-Labeled Image Segmentation. - Minqing Zhang; Jiantao Gao; Zhen Lyu; Weibing Zhao; Qin Wang 011; Weizhen Ding; Sheng Wang 001; Zhen Li 026; Shuguang Cui (MICCAI (1), 2020)

Fuzzy-Engineered Multi-Cloud Resource Brokering for Data-intensive Applications. - Ashish Pandey; Prasad Calyam; Zhen Lyu; Trupti Joshi (CCGRID, 2021)

Application of SNPViz v2.0 using next-generation sequencing data sets in the discovery of potential causative mutations in candidate genes associated with phenotypes. - Shuai Zeng; Mária Skrabisová; Zhen Lyu; Yen On Chan; Nicholas Dietz; Kristin Bilyeu; Trupti Joshi (Int. J. Data Min. Bioinform., 2021)

The Visual Scanning Behavior and Mental Workload of Drivers at Prairie Highway Intersections With Different Characteristics. - Zhen Lyu; Chunhua Qi; Shoulin Zhu; Haixiao Wang (IEEE Access, 2022)

Knowledge-Engineered Multi-Cloud Resource Brokering for Application Workflow Optimization. - Ashish Pandey; Prasad Calyam; Zhen Lyu; Songjie Wang; Dmitrii Chemodanov; Trupti Joshi (IEEE Trans. Netw. Serv. Manag., 2023)

Improving Wi-Fi indoor positioning based on matching visibility with virtual simulation. - Zhen Lyu; Lin Li; Qian Meng; Guohao Zhang (IPIN, 2024)

Spatio-Temporal Contextual Learning for Single Object Tracking on Point Clouds. - Jiantao Gao; Xu Yan 005; Weibing Zhao; Zhen Lyu; Yinghong Liao; Chaoda Zheng (IEEE Trans. Neural Networks Learn. Syst., 2024)

Tracking neural activity patterns during rapid high-altitude transitions. - Ji-Yu Xie; Yi Zhang; Wei Shen; Liying Wu; Quanhao Yu; Zhen Lyu; Liangyuan Song; Rui Yang; Shuyi Ning; Wenwen Duan; Ying Li; Yimeng Liu; et al. (NeuroImage, 2025)

Wi-Fi RTT Indoor Positioning Using Visibility Matching With NLOS Receptions. - Zhen Lyu; Shiyu Bai; Xin Wang; Lin Li; Guohao Zhang (IEEE Internet Things J., 2025)

Flow-induced oscillation dynamics of a U-shaped buckled membrane: a comparison with the leading-edge-clamped membrane. - Zhen Lyu; Weiwei Cai; Benlong Wang; Yingzheng Liu (J. Vis., 2025)

A temporally adaptive particle tracking velocimetry using continuous-wave illumination for fused event- and frame-based cameras. - Xin Zeng; Jiajun Cao; Zhen Lyu; Chuangxin He; Weiwei Cai; Yingzheng Liu (J. Vis., 2025)