PlasGUN: gene prediction in plasmid metagenomic short reads using deep learning. - Zhencheng Fang; Jie Tan; Shufang Wu; Mo Li; Chunhui Wang; Yongchu Liu; Huaiqiu Zhu (Bioinform., 2020)

HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes. - Jie Tan; Zhencheng Fang; Shufang Wu; Qian Guo; Xiaoqing Jiang; Huaiqiu Zhu (Bioinform., 2022)

metaProbiotics: a tool for mining probiotic from metagenomic binning data based on a language model. - Shufang Wu; Tao Feng; Waijiao Tang; Cancan Qi; Jie Gao; Xiaolong He; Jiaxuan Wang; Hongwei Zhou; Zhencheng Fang (Briefings Bioinform., 2024)