Classification of Cancer Types Based on Decision Tree Analysis of Gene Function Expression Profiles. - Zheng Guo 002; Tianwen Zhang; Shaoqi Rao; Qi Wang; Hui Yu; Xia Li 004 (SNPD, 2004)

Feature Gene Selection Based on a Hybrid between Genetic Algorithm and Support Vector Machine. - Li Li 090; Wei Jiang 023; Wu Linna; Shaoqi Rao; Zheng Guo 002; Xia Li 004 (SNPD, 2004)

Reverse Engineering of Multiple Time-delayed Gene Regulatory Networks. - Xia Li 004; Tianwen Zhang; Wei Jiang 023; Shaoqi Rao; Li Li 090; Zheng Guo 002 (SNPD, 2004)

Application of a Genetic Algorithm - Support Vector Machine Hybrid for Prediction of Clinical Phenotypes Based on Genome-Wide SNP Profiles of Sib Pairs. - Binsheng Gong; Zheng Guo 002; Jing Li 115; Guohua Zhu; Sali Lv; Shaoqi Rao; Xia Li 004 (FSKD (2), 2005)

Large-Scale Ensemble Decision Analysis of Sib-Pair IBD Profiles for Identification of the Relevant Molecular Signatures for Alcoholism. - Xia Li 004; Shaoqi Rao; Wei Zhang; Zheng Guo 002; Wei Jiang 023; Lei Du 002 (FSKD (2), 2005)

Towards precise classification of cancers based on robust gene functional expression profiles. - Zheng Guo 002; Tianwen Zhang; Xia Li 004; Qi Wang; Jianzhen Xu; Hui Yu; Jing Zhu 004; Haiyun Wang; Chenguang Wang 004; Eric J. Topol; Qing Wang; Shaoqi Rao (BMC Bioinform., 2005)

Effects of replacing the unreliable cDNA microarray measurements on the disease classification based on gene expression profiles and functional modules. - Dong Wang 011; Yingli Lv; Zheng Guo 002; Xia Li 004; Yanhui Li; Jing Zhu 004; Da Yang 003; Jianzhen Xu; Chenguang Wang 004; Shaoqi Rao; Baofeng Yang (Bioinform., 2006)

Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling. - Xia Li 004; Shaoqi Rao; Wei Jiang 023; Chuanxing Li; Yun Xiao 001; Zheng Guo 002; Qingpu Zhang; Lihong Wang; Lei Du 002; Jing Li 115; Li Li 090; Tianwen Zhang; et al. (BMC Bioinform., 2006)

Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network. - Zheng Guo 002; Yongjin Li; Xue Gong; Chen Yao; Wencai Ma; Dong Wang 011; Yanhui Li; Jing Zhu 004; Min Zhang 009; Da Yang 003; Jing Wang 004 (Bioinform., 2007)

Disease Prediction Power and Stability of Differential Expressed Genes. - Chen Yao; Min Zhang 009; Jinfeng Zou; Xue Gong; Lin Zhang; Chenguang Wang 004; Zheng Guo 002 (BMEI (1), 2008)

Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories. - Da Yang 003; Yanhui Li; Hui Xiao; Qing Liu; Min Zhang 009; Jing Zhu 004; Wencai Ma; Chen Yao; Jing Wang 004; Dong Wang 011; Zheng Guo 002; Baofeng Yang (Bioinform., 2008)

Apparently low reproducibility of true differential expression discoveries in microarray studies. - Min Zhang 009; Chen Yao; Zheng Guo 002; Jinfeng Zou; Lin Zhang; Hui Xiao; Dong Wang 011; Da Yang 003; Xue Gong; Jing Zhu 004; Yanhui Li; Xia Li 004 (Bioinform., 2008)

Identifying Candidate Cancer Genes Based on Their Somatic Mutations Co-Occurring with Cancer Genes in Cancer Genome Profiling. - Jing Zhu 004; Xiaopei Shen; Yang Zhang 125; Zheng Guo 002; Hui Xiao; Yunyan Gu (BMEI, 2009)

Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network. - Zheng Guo 002; Lei Wang; Yongjin Li; Xue Gong; Chen Yao; Wencai Ma; Dong Wang 011; Yanhui Li; Jing Zhu 004; Min Zhang 009; Da Yang 003; Shaoqi Rao; et al. (Bioinform., 2009)

Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes. - Min Zhang 009; Lin Zhang; Jinfeng Zou; Chen Yao; Hui Xiao; Qing Liu; Jing Wang 004; Dong Wang 011; Chenguang Wang 004; Zheng Guo 002 (Bioinform., 2009)

Extracting multi-function features for cancer genes. - Wencai Ma; Xinwu Guo; Chenguang Wang 004; Yunyan Gu; Yuannv Zhang; Jiguang Xia; Zheng Guo 002 (FSKD, 2010)

Viewing cancer genes from co-evolving gene modules. - Jing Zhu 004; Hui Xiao; Xiaopei Shen; Jing Wang 004; Jinfeng Zou; Lin Zhang; Da Yang 003; Wencai Ma; Chen Yao; Xue Gong; Min Zhang 009; Yang Zhang 125; et al. (Bioinform., 2010)

Extracting consistent knowledge from highly inconsistent cancer gene data sources. - Xue Gong; Ruihong Wu; Yuannv Zhang; Wenyuan Zhao; Lixin Cheng; Yunyan Gu; Lin Zhang; Jing Wang 004; Jing Zhu 004; Zheng Guo 002 (BMC Bioinform., 2010)

Revealing and avoiding bias in semantic similarity scores for protein pairs. - Jing Wang 004; Xianxiao Zhou; Jing Zhu 004; Chenggui Zhou; Zheng Guo 002 (BMC Bioinform., 2010)

Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis. - Chen Yao; Hongdong Li; Chenggui Zhou; Lin Zhang; Jinfeng Zou; Zheng Guo 002 (BMC Syst. Biol., 2010)

Extensive increase of microarray signals in cancers calls for novel normalization assumptions. - Dong Wang 011; Lixin Cheng; Mingyue Wang; Ruihong Wu; Pengfei Li 002; Bin Li; Yuannv Zhang; Yunyan Gu; Wenyuan Zhao; Chenguang Wang 004; Zheng Guo 002 (Comput. Biol. Chem., 2011)

GO-function: deriving biologically relevant functions from statistically significant functions. - Jing Wang 004; Xianxiao Zhou; Jing Zhu 004; Yunyan Gu; Wenyuan Zhao; Jinfeng Zou; Zheng Guo 002 (Briefings Bioinform., 2012)

Revealing weak differential gene expressions and their reproducible functions associated with breast cancer metastasis. - Jinfeng Zou; Chunxiang Hao; Guini Hong; Junjie Zheng; Lang He; Zheng Guo 002 (Comput. Biol. Chem., 2012)

Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes. - Hongbo Shi; Juan Xu 001; Guangde Zhang; Liangde Xu; Chunquan Li 002; Li Wang 164; Zheng Zhao; Wei Jiang 023; Zheng Guo 002; Xia Li 004 (BMC Syst. Biol., 2013)

Individual-level analysis of differential expression of genes and pathways for personalized medicine. - Hongwei Wang 003; Qiang Sun; Wenyuan Zhao; Lishuang Qi; Yunyan Gu; Pengfei Li 002; Mengmeng Zhang; Yang Li 023; Shu-Lin Liu; Zheng Guo 002 (Bioinform., 2015)

Critical limitations of prognostic signatures based on risk scores summarized from gene expression levels: a case study for resected stage I non-small-cell lung cancer. - Lishuang Qi; Libin Chen; Yang Li 023; Yuan Qin; Rufei Pan; Wenyuan Zhao; Yunyan Gu; Hongwei Wang 003; Ruiping Wang 002; Xiangqi Chen; Zheng Guo 002 (Briefings Bioinform., 2016)

Individualized identification of disease-associated pathways with disrupted coordination of gene expression. - Hongwei Wang 003; Hao Cai; Lu Ao; Haidan Yan; Wenyuan Zhao; Lishuang Qi; Yunyan Gu; Zheng Guo 002 (Briefings Bioinform., 2016)

A landscape of synthetic viable interactions in cancer. - Yunyan Gu; Ruiping Wang 002; Yue Han; Wenbin Zhou; Zhangxiang Zhao; Tingting Chen; Yuanyuan Zhang; Fuduan Peng; Haihai Liang; Lishuang Qi; Wenyuan Zhao; Da Yang 003; et al. (Briefings Bioinform., 2018)

A simple way to detect disease-associated cellular molecular alterations from mixed-cell blood samples. - Guini Hong; Hongdong Li; Mengyao Li; Weicheng Zheng; Jing Li 115; Meirong Chi; Jun Cheng; Zheng Guo 002 (Briefings Bioinform., 2018)

Individualized analysis of differentially expressed miRNAs with application to the identification of miRNAs deregulated commonly in lung cancer tissues. - Haidan Yan; Hao Cai; Qingzhou Guan; Jun He; Juan Zhang; You Guo; Haiyan Huang; Xiangyu Li; Yawei Li; Yunyan Gu; Lishuang Qi; Zheng Guo 002 (Briefings Bioinform., 2018)

A rank-based algorithm of differential expression analysis for small cell line data with statistical control. - Xiangyu Li; Hao Cai; Xianlong Wang 002; Lu Ao; You Guo; Jun He; Yunyan Gu; Lishuang Qi; Qingzhou Guan; Xu Lin; Zheng Guo 002 (Briefings Bioinform., 2019)

Systematic review regulatory principles of non-coding RNAs in cardiovascular diseases. - Yongsheng Li 001; Caiqin Huo; Tao Pan; Lili Li; Xiyun Jin; Xiaoyu Lin; Juan Chen; Jinwen Zhang; Zheng Guo 002; Juan Xu 001; Xia Li 004 (Briefings Bioinform., 2019)

Link synthetic lethality to drug sensitivity of cancer cells. - Ruiping Wang 002; Yue Han; Zhangxiang Zhao; Fan Yang; Tingting Chen; Wenbin Zhou; Xianlong Wang 002; Lishuang Qi; Wenyuan Zhao; Zheng Guo 002; Yunyan Gu (Briefings Bioinform., 2019)

Identification of population-level differentially expressed genes in one-phenotype data. - Jiajing Xie; Yang Xu; Haifeng Chen; Meirong Chi; Jun He; Meifeng Li; Hui Liu; Jie Xia; Qingzhou Guan; Zheng Guo 002; Haidan Yan (Bioinform., 2020)

Prostate cancer early diagnosis: circulating microRNA pairs potentially beyond single microRNAs upon 1231 serum samples. - Hua-Ping Liu; Hung-Ming Lai; Zheng Guo 002 (Briefings Bioinform., 2021)