Approximate Nearest Neighbor Search and Lightweight Dense Vector Reranking in Multi-Stage Retrieval Architectures. - Zhengkai Tu; Wei Yang 017; Zihang Fu; Yuqing Xie 001; Luchen Tan; Kun Xiong; Ming Li 001; Jimmy Lin (ICTIR, 2020)

Rapid Adaptation of BERT for Information Extraction on Domain-Specific Business Documents. - Ruixue Zhang; Wei Yang 017; Luyun Lin; Zhengkai Tu; Yuqing Xie 001; Zihang Fu; Yuhao Xie; Luchen Tan; Kun Xiong; Jimmy Lin (CoRR, 2020)

To Paraphrase or Not To Paraphrase: User-Controllable Selective Paraphrase Generation. - Mohan Zhang; Luchen Tan; Zhengkai Tu; Zihang Fu; Kun Xiong; Ming Li 001; Jimmy Lin (CoRR, 2020)

Don't Change Me! User-Controllable Selective Paraphrase Generation. - Mohan Zhang; Luchen Tan; Zihang Fu; Kun Xiong; Jimmy Lin; Ming Li 001; Zhengkai Tu (EACL, 2021)

Robust Molecular Image Recognition: A Graph Generation Approach. - Yujie Qian; Zhengkai Tu; Jiang Guo; Connor W. Coley; Regina Barzilay (CoRR, 2022)

Improving the performance of models for one-step retrosynthesis through re-ranking. - Min Htoo Lin; Zhengkai Tu; Connor W. Coley (J. Cheminformatics, 2022)

Permutation Invariant Graph-to-Sequence Model for Template-Free Retrosynthesis and Reaction Prediction. - Zhengkai Tu; Connor W. Coley (J. Chem. Inf. Model., 2022)

Predictive Chemistry Augmented with Text Retrieval. - Yujie Qian; Zhening Li; Zhengkai Tu; Connor W. Coley; Regina Barzilay (EMNLP, 2023)

FusionRetro: Molecule Representation Fusion via In-Context Learning for Retrosynthetic Planning. - Songtao Liu; Zhengkai Tu; Minkai Xu; Zuobai Zhang; Lu Lin 001; Rex Ying; Jian Tang 005; Peilin Zhao; Dinghao Wu (ICML, 2023)

MolScribe: Robust Molecular Structure Recognition with Image-to-Graph Generation. - Yujie Qian; Jiang Guo; Zhengkai Tu; Zhening Li; Connor W. Coley; Regina Barzilay (J. Chem. Inf. Model., 2023)

RxnScribe: A Sequence Generation Model for Reaction Diagram Parsing. - Yujie Qian; Jiang Guo; Zhengkai Tu; Connor W. Coley; Regina Barzilay (J. Chem. Inf. Model., 2023)

Beyond Major Product Prediction: Reproducing Reaction Mechanisms with Machine Learning Models Trained on a Large-Scale Mechanistic Dataset. - Joonyoung F. Joung; Mun Hong Fong; Jihye Roh; Zhengkai Tu; John Bradshaw; Connor W. Coley (CoRR, 2024)

SDDBench: A Benchmark for Synthesizable Drug Design. - Songtao Liu; Zhengkai Tu; Hanjun Dai; Peng Liu (CoRR, 2024)

ASKCOS: an open source software suite for synthesis planning. - Zhengkai Tu; Sourabh J. Choure; Mun Hong Fong; Jihye Roh; Itai Levin; Kevin Yu; Joonyoung F. Joung; Nathan Morgan; Shih-Cheng Li; Xiaoqi Sun; Huiqian Lin; Mark Murnin; et al. (CoRR, 2025)