Surface parameterization via aligning optimal local flattening. - Zhonggui Chen; Ligang Liu 001; Zhengyue Zhang; Guojin Wang (Symposium on Solid and Physical Modeling, 2007)

Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations. - Zhengyue Zhang; Jirí Sponer; Giovanni Bussi; Vojtech Mlýnský; Petr Sulc; Chad R. Simmons; Nicholas Stephanopoulos; Miroslav Krepl (J. Chem. Inf. Model., 2023)

Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations. - Zhengyue Zhang; Vojtech Mlýnský; Miroslav Krepl; Jirí Sponer; Petr Stadlbauer (J. Chem. Inf. Model., 2024)