SeqVISTA: a graphical tool for sequence feature visualization and comparison. - Zhenjun Hu; Martin C. Frith; Tianhua Niu; Zhiping Weng (BMC Bioinform., 2003)

SNPicker: a graphical tool for primer picking in designing mutagenic endonuclease restriction assays. - Tianhua Niu; Zhenjun Hu (Bioinform., 2004)

VisANT: an online visualization and analysis tool for biological interaction data. - Zhenjun Hu; Joseph C. Mellor; Jie Wu 011; Charles DeLisi (BMC Bioinform., 2004)

SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation. - Zhenjun Hu; Yutao Fu; Anason S. Halees; Szymon M. Kielbasa; Zhiping Weng (Nucleic Acids Res., 2004)

Dynamic visual data mining: biological sequence analysis and annotation using SeqVISTA. - Tianhua Niu; Zhenjun Hu (Int. J. Bioinform. Res. Appl., 2005)

VisANT: data-integrating visual framework for biological networks and modules. - Zhenjun Hu; Joe Mellor; Jie Wu 011; Takuji Yamada; Dustin T. Holloway; Charles DeLisi (Nucleic Acids Res., 2005)

Gene annotation and network inference by phylogenetic profiling. - Jie Wu 011; Zhenjun Hu; Charles DeLisi (BMC Bioinform., 2006)

VisANT 3.0: new modules for pathway visualization, editing, prediction and construction. - Zhenjun Hu; David M. Ng; Takuji Yamada; Chunnuan Chen; Shuichi Kawashima; Joe Mellor; Bolan Linghu; Minoru Kanehisa; Joshua M. Stuart; Charles DeLisi (Nucleic Acids Res., 2007)

VisANT: an integrative framework for networks in systems biology. - Zhenjun Hu; Evan S. Snitkin; Charles DeLisi (Briefings Bioinform., 2008)

VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology. - Zhenjun Hu; Jui-Hung Hung; Yan Wang; Yi-Chien Chang; Chia-Ling Huang; Matt Huyck; Charles DeLisi (Nucleic Acids Res., 2009)

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes. - Richard J. Roberts; Yi-Chien Chang; Zhenjun Hu; John Rachlin; Brian P. Anton; Revonda M. Pokrzywa; Han-Pil Choi; Lina L. Faller; Jyotsna Guleria; Genevieve Housman; Niels Klitgord; Varun Mazumdar; et al. (Nucleic Acids Res., 2011)

Gene set enrichment analysis: performance evaluation and usage guidelines. - Jui-Hung Hung; Tun-Hsiang Yang; Zhenjun Hu; Zhiping Weng; Charles DeLisi (Briefings Bioinform., 2012)

Using Functional Signatures to Identify Repositioned Drugs for Breast, Myelogenous Leukemia and Prostate Cancer. - Daichi Shigemizu; Zhenjun Hu; Jui-Hung Hung; Chia-Ling Huang; Yajie Wang; Charles DeLisi (PLoS Comput. Biol., 2012)

VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies. - Zhenjun Hu; Yi-Chien Chang; Yan Wang; Chia-Ling Huang; Yang Liu; Feng Tian; Brian Granger; Charles DeLisi (Nucleic Acids Res., 2013)

COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps. - Yi-Chien Chang; Zhenjun Hu; John Rachlin; Brian P. Anton; Simon Kasif; Richard J. Roberts; Martin Steffen (Nucleic Acids Res., 2016)

Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0. - Brian Granger; Yi-Chien Chang; Yan Wang; Charles DeLisi; Daniel Segrè; Zhenjun Hu (PLoS Comput. Biol., 2016)