CircularLogo: A lightweight web application to visualize intra-motif dependencies. - Zhenqing Ye; Tao Ma; Michael Kalmbach; Surendra Dasari; Jean-Pierre A. Kocher; Liguo Wang 002 (BMC Bioinform., 2017)

CpGtools: a python package for DNA methylation analysis. - Ting Wei; Jinfu J. Nie; Nicholas B. Larson; Zhenqing Ye; Jeanette E. Eckel-Passow; Keith D. Robertson; Jean-Pierre A. Kocher; Liguo Wang 002 (Bioinform., 2021)

Deep learning tackles single-cell analysis - a survey of deep learning for scRNA-seq analysis. - Mario Flores; Zhentao Liu; Tinghe Zhang; Md Musaddaqui Hasib; Yu-Chiao Chiu; Zhenqing Ye; Karla Paniagua; Sumin Jo; Jianqiu Zhang 002; Shou-Jiang Gao; Yu-Fang Jin; Yidong Chen 002; et al. (Briefings Bioinform., 2022)

DiM-Gesture: Co-Speech Gesture Generation with Adaptive Layer Normalization Mamba-2 framework. - Fan Zhang 105; Naye Ji; Fuxing Gao; Bozuo Zhao; Jingmei Wu; Yanbing Jiang; Hui Du; Zhenqing Ye; Jiayang Zhu; WeiFan Zhong; Leyao Yan; Xiaomeng Ma (CoRR, 2024)

DiM-Gestor: Co-Speech Gesture Generation with Adaptive Layer Normalization Mamba-2. - Fan Zhang 105; Siyuan Zhao; Naye Ji; Zhaohan Wang; Jingmei Wu; Fuxing Gao; Zhenqing Ye; Leyao Yan; Lanxin Dai; Weidong Geng; Xin Lyu 004; Bozuo Zhao; et al. (CoRR, 2024)