Sparse deep nonnegative matrix factorization. - Zhenxing Guo 001; Shihua Zhang (Big Data Min. Anal., 2020)

Robust partial reference-free cell composition estimation from tissue expression. - Ziyi Li 001; Zhenxing Guo 001; Ying Cheng; Peng Jin; Hao Wu 003 (Bioinform., 2020)

Detecting m6A methylation regions from Methylated RNA Immunoprecipitation Sequencing. - Zhenxing Guo 001; Andrew M. Shafik; Peng Jin; Zhijin Wu; Hao Wu 003 (Bioinform., 2021)

Differential RNA methylation analysis for MeRIP-seq data under general experimental design. - Zhenxing Guo 001; Andrew M. Shafik; Peng Jin; Hao Wu 003 (Bioinform., 2022)

Evaluation of epitranscriptome-wide N6-methyladenosine differential analysis methods. - Daoyu Duan; Wen Tang 003; Runshu Wang; Zhenxing Guo 001; Hao Feng 005 (Briefings Bioinform., 2023)

m6A peak calling accounting for varying sequencing bias across regions and samples. - Lanyu Zhang; Zhenxing Guo 001; Zhaohui Qin; Zhijin Wu (BIBM, 2024)

magpie: A power evaluation method for differential RNA methylation analysis in N6-methyladenosine sequencing. - Zhenxing Guo 001; Daoyu Duan; Wen Tang 003; Julia Zhu; William S. Bush; Liangliang Zhang; Xiaofeng Zhu; Fulai Jin; Hao Feng 005 (PLoS Comput. Biol., 2024)