Transformer Based Generative Adversarial Network for Liver Segmentation. - Ugur Demir; Zheyuan Zhang 001; Bin Wang 068; Matthew Antalek; Elif Keles; Debesh Jha; Amir Borhani; Daniela P. Ladner; Ulas Bagci (ICIAP Workshops, 2022)

Dynamic Linear Transformer for 3D Biomedical Image Segmentation. - Zheyuan Zhang 001; Ulas Bagci (MLMI@MICCAI, 2022)

GazeSAM: Interactive Image Segmentation with Eye Gaze and Segment Anything Model. - Bin Wang 068; Armstrong Aboah; Zheyuan Zhang 001; Hongyi Pan; Ulas Bagci (Gaze Meets ML, 2023)

Ensemble Learning with Residual Transformer for Brain Tumor Segmentation. - Lanhong Yao; Zheyuan Zhang 001; Ulas Bagci (ISBI, 2023)

Radiomics Boosts Deep Learning Model for IPMN Classification. - Lanhong Yao; Zheyuan Zhang 001; Ugur Demir; Elif Keles; Camila Vendrami; Emil Agarunov; Candice W. Bolan; Ivo Schoots; Marc J. Bruno; Rajesh Keswani; Frank H. Miller; Tamas Gonda; et al. (MLMI@MICCAI (2), 2023)

Domain Generalization with Adversarial Intensity Attack for Medical Image Segmentation. - Zheyuan Zhang 001; Bin Wang 068; Lanhong Yao; Ugur Demir; Debesh Jha; Ismail Baris Turkbey; Boqing Gong; Ulas Bagci (CoRR, 2023)

Ensuring Trustworthy Medical Artificial Intelligence through Ethical and Philosophical Principles. - Debesh Jha; Ashish Rauniyar; Abhishek Srivastava; Desta Haileselassie Hagos; Nikhil Kumar Tomar; Vanshali Sharma; Elif Keles; Zheyuan Zhang 001; Ugur Demir; Ahmet Topcu; Anis Yazidi; Jan Erik Håkegård; et al. (CoRR, 2023)

GazeSAM: What You See is What You Segment. - Bin Wang 068; Armstrong Aboah; Zheyuan Zhang 001; Ulas Bagci (CoRR, 2023)

GazeGNN: A Gaze-Guided Graph Neural Network for Disease Classification. - Bin Wang 068; Hongyi Pan; Armstrong Aboah; Zheyuan Zhang 001; Ahmet Enis Çetin; Drew A. Torigian; Baris Turkbey; Elizabeth A. Krupinski; Jayaram K. Udupa; Ulas Bagci (CoRR, 2023)

An objective validation of polyp and instrument segmentation methods in colonoscopy through Medico 2020 polyp segmentation and MedAI 2021 transparency challenges. - Debesh Jha; Vanshali Sharma; Debapriya Banik; Debayan Bhattacharya; Kaushiki Roy; Steven Alexander Hicks; Nikhil Kumar Tomar; Vajira Thambawita; Adrian Krenzer; Ge-Peng Ji; Sahadev Poudel; George Batchkala; et al. (CoRR, 2023)

EMIT-Diff: Enhancing Medical Image Segmentation via Text-Guided Diffusion Model. - Zheyuan Zhang 001; Lanhong Yao; Bin Wang 068; Debesh Jha; Elif Keles; Alpay Medetalibeyoglu; Ulas Bagci (CoRR, 2023)

PAM-UNet: Shifting Attention on Region of Interest in Medical Images. - Abhijit Das; Debesh Jha; Vandan Gorade; Koushik Biswas; Hongyi Pan; Zheyuan Zhang 001; Daniela P. Ladner; Yury Velichko; Amir Borhani; Ulas Bagci (EMBC, 2024)

Detection of Peri-Pancreatic Edema using Deep Learning and Radiomics Techniques. - Ziliang Hong; Debesh Jha; Koushik Biswas; Zheyuan Zhang 001; Yury Velichko; Cemal Yazici; Temel Tirkes; Amir Borhani; Baris Turkbey; Alpay Medetalibeyoglu; Gorkem Durak; Ulas Bagci (EMBC, 2024)

Domain Generalization with fourier Transform and soft thresholding. - Hongyi Pan; Bin Wang 068; Zheyuan Zhang 001; Xin Zhu 005; Debesh Jha; Ahmet Enis Çetin; Concetto Spampinato; Ulas Bagci (ICASSP, 2024)

Explainable Transformer Prototypes for Medical Diagnoses. - Ugur Demir; Debesh Jha; Zheyuan Zhang 001; Elif Keles; Bradley D. Allen; Aggelos K. Katsaggelos; Ulas Bagci (ISBI, 2024)

Practical and Ethical Considerations for Generative AI in Medical Imaging. - Debesh Jha; Ashish Rauniyar; Desta Haileselassie Hagos; Vanshali Sharma; Nikhil Kumar Tomar; Zheyuan Zhang 001; Ilkin Isler; Gorkem Durak; Michael B. Wallace; Cemal Yazici; Tyler M. Berzin; Koushik Biswas; et al. (FAIMI/EPIMI@MICCAI, 2024)

Optimizing Synthetic Data for Enhanced Pancreatic Tumor Segmentation. - Linkai Peng; Zheyuan Zhang 001; Gorkem Durak; Frank H. Miller; Alpay Medetalibeyoglu; Michael B. Wallace; Ulas Bagci (AIPAD/PILM@MICCAI, 2024)

GazeGNN: A Gaze-Guided Graph Neural Network for Chest X-ray Classification. - Bin Wang 068; Hongyi Pan; Armstrong Aboah; Zheyuan Zhang 001; Elif Keles; Drew A. Torigian; Baris Turkbey; Elizabeth A. Krupinski; Jayaram K. Udupa; Ulas Bagci (WACV, 2024)

Domain Generalization with Correlated Style Uncertainty. - Zheyuan Zhang 001; Bin Wang 068; Debesh Jha; Ugur Demir; Ulas Bagci (WACV, 2024)

MDNet: Multi-Decoder Network for Abdominal CT Organs Segmentation. - Debesh Jha; Nikhil Kumar Tomar; Koushik Biswas; Gorkem Durak; Matthew Antalek; Zheyuan Zhang 001; Bin Wang 068; Md Mostafijur Rahman; Hongyi Pan; Alpay Medetalibeyoglu; Yury Velichko; Daniela P. Ladner; et al. (CoRR, 2024)

Adaptive Aggregation Weights for Federated Segmentation of Pancreas MRI. - Hongyi Pan; Gorkem Durak; Zheyuan Zhang 001; Yavuz Taktak; Elif Keles; Ertugrul Aktas; Alpay Medetalibeyoglu; Yury Velichko; Concetto Spampinato; Ivo Schoots; Marco J. Bruno; Rajesh N. Keswani; et al. (CoRR, 2024)

MDNet: Multi-Decoder Network for Abdominal CT Organs Segmentation. - Debesh Jha; Nikhil Kumar Tomar; Koushik Biswas; Gorkem Durak; Matthew Antalek; Zheyuan Zhang 001; Bin Wang 068; Md Mostafijur Rahman; Hongyi Pan; Alpay Medetalibeyoglu; Vandan Gorade; Abhijit Das; et al. (ICASSP, 2025)

Adaptive Aggregation Weights for Federated Segmentation of Pancreas MRI. - Hongyi Pan; Gorkem Durak; Zheyuan Zhang 001; Yavuz Taktak; Elif Keles; Halil Ertugrul Aktas; Alpay Medetalibeyoglu; Yury Velichko; Concetto Spampinato; Ivo Schoots; Marco J. Bruno; Rajesh N. Keswani; et al. (ISBI, 2025)

IPMN Risk Assessment Under Federated Learning Paradigm. - Hongyi Pan; Ziliang Hong; Gorkem Durak; Elif Keles; Halil Ertugrul Aktas; Yavuz Taktak; Alpay Medetalibeyoglu; Zheyuan Zhang 001; Yury Velichko; Concetto Spampinato; Ivo Schoots; Marco J. Bruno; et al. (ISBI, 2025)

Validating polyp and instrument segmentation methods in colonoscopy through Medico 2020 and MedAI 2021 Challenges. - Debesh Jha; Vanshali Sharma; Debapriya Banik; Debayan Bhattacharya; Kaushiki Roy; Steven Alexander Hicks; Nikhil Kumar Tomar; Vajira Thambawita; Adrian Krenzer; Ge-Peng Ji; Sahadev Poudel; George Batchkala; et al. (Medical Image Anal., 2025)

Large-scale multi-center CT and MRI segmentation of pancreas with deep learning. - Zheyuan Zhang 001; Elif Keles; Gorkem Durak; Yavuz Taktak; Onkar Susladkar; Vandan Gorade; Debesh Jha; Asli C. Ormeci; Alpay Medetalibeyoglu; Lanhong Yao; Bin Wang 068; Ilkin Sevgi Isler; et al. (Medical Image Anal., 2025)

VideoAds for Fast-Paced Video Understanding: Where Opensource Foundation Models Beat GPT-4o & Gemini-1.5 Pro. - Zheyuan Zhang 001; Monica Dou; Linkai Peng; Hongyi Pan; Ulas Bagci; Boqing Gong (CoRR, 2025)

TAGS: 3D Tumor-Adaptive Guidance for SAM. - Sirui Li; Linkai Peng; Zheyuan Zhang 001; Gorkem Durak; Ulas Bagci (CoRR, 2025)

Pediatric Pancreas Segmentation from MRI Scans with Deep Learning. - Elif Keles; Merve Yazol; Gorkem Durak; Ziliang Hong; Halil Ertugrul Aktas; Zheyuan Zhang 001; Linkai Peng; Onkar Susladkar; Necati Guzelyel; Oznur Leman Boyunaga; Cemal Yazici; Mark Lowe; et al. (CoRR, 2025)

Cyst-X: AI-Powered Pancreatic Cancer Risk Prediction from Multicenter MRI in Centralized and Federated Learning. - Hongyi Pan; Gorkem Durak; Elif Keles; Deniz Seyithanoglu; Zheyuan Zhang 001; Alpay Medetalibeyoglu; Halil Ertugrul Aktas; Andrea Mia Bejar; Ziliang Hong; Yavuz Taktak; Gulbiz Dagoglu Kartal; Sukru Mehmet Erturk; et al. (CoRR, 2025)

Rethink Domain Generalization in Heterogeneous Sequence MRI Segmentation. - Zheyuan Zhang 001; Linkai Peng; Wanying Dou; Cuiling Sun; Halil Ertugrul Aktas; Andrea Mia Bejar; Elif Keles; Gorkem Durak; Ulas Bagci (CoRR, 2025)

Pancreas Part Segmentation under Federated Learning Paradigm. - Ziliang Hong; Halil Ertugrul Aktas; Andrea Mia Bejar; Katherine Wu; Hongyi Pan; Gorkem Durak; Zheyuan Zhang 001; Sait Kayali; Temel Tirkes; Federica Proietto Salanitri; Concetto Spampinato; Michael Goggins; et al. (CoRR, 2025)

DiffBoost: Enhancing Medical Image Segmentation via Text-Guided Diffusion Model. - Zheyuan Zhang 001; Lanhong Yao; Bin Wang 068; Debesh Jha; Gorkem Durak; Elif Keles; Alpay Medetalibeyoglu; Ulas Bagci (IEEE Trans. Medical Imaging, 2025)