CisPi: a transcriptomic score for disclosing cis-acting disease-associated lincRNAs. - Zhezhen Wang; John M. Cunningham; Xinan Holly Yang (Bioinform., 2018)

Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq. - Xiangying Sun; Zhezhen Wang; Johnathon M. Hall; Carlos Perez-Cervantes; Alexander J. Ruthenburg; Ivan P. Moskowitz; Michael Gribskov; Xinan Holly Yang (PLoS Comput. Biol., 2020)