Polyphest: fast polyploid phylogeny estimation. - Zhi Yan 008; Zhen Cao; Luay Nakhleh (Bioinform., 2024)

NestedBD: Bayesian inference of phylogenetic trees from single-cell copy number profiles under a birth-death model. - Yushu Liu; Mohammad Amin Edrisi; Zhi Yan 008; Huw A. Ogilvie; Luay Nakhleh (Algorithms Mol. Biol., 2024)