2D molecular graphics: a flattened world of chemistry and biology. - Peng Zhou 003; Zhicai Shang (Briefings Bioinform., 2009)

Side-chain conformational space analysis (SCSA): A multi conformation-based QSAR approach for modeling and prediction of protein-peptide binding affinities. - Peng Zhou 003; Xiang Chen; Zhicai Shang (J. Comput. Aided Mol. Des., 2009)

2D depiction of nonbonding interactions for protein complexes. - Peng Zhou 003; Feifei Tian; Zhicai Shang (J. Comput. Chem., 2009)

Geometric similarity between protein-RNA interfaces. - Peng Zhou; Jianwei Zou; Feifei Tian; Zhicai Shang (J. Comput. Chem., 2009)

Fluorine Bonding - How Does It Work In Protein-Ligand Interactions? - Peng Zhou 003; Jianwei Zou; Feifei Tian; Zhicai Shang (J. Chem. Inf. Model., 2009)

Systematic Classification and Analysis of Themes in Protein-DNA Recognition. - Peng Zhou 003; Feifei Tian; Yanrong Ren; Zhicai Shang (J. Chem. Inf. Model., 2010)

Indirect Readout in Protein-Peptide Recognition: A Different Story from Classical Biomolecular Recognition. - Hua Yu; Peng Zhou 003; Maolin Deng; Zhicai Shang (J. Chem. Inf. Model., 2014)