Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation. - Yang Cao; Lin Song; Zhichao Miao; Yun Hu; Liqing Tian; Taijiao Jiang (Bioinform., 2011)

RASP: rapid modeling of protein side chain conformations. - Zhichao Miao; Yang Cao; Taijiao Jiang (Bioinform., 2011)

A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs. - Zhichao Miao; Eric Westhof (PLoS Comput. Biol., 2015)

RBscore&NBench: a high-level web server for nucleic acid binding residues prediction with a large-scale benchmarking database. - Zhichao Miao; Eric Westhof (Nucleic Acids Res., 2016)

Decoding human fetal liver haematopoiesis. - Dorin-Mirel Popescu; Rachel A. Botting; Emily Stephenson; Kile Green; Simone Webb; Laura Jardine; Emily F. Calderbank; Krzysztof Polanski; Issac Goh; Mirjana Efremova; Meghan Acres; Daniel Maunder; et al. (Nat., 2019)

BBKNN: fast batch alignment of single cell transcriptomes. - Krzysztof Polanski; Matthew D. Young; Zhichao Miao; Kerstin B. Meyer; Sarah A. Teichmann; Jong-Eun Park (Bioinform., 2020)

Expression Atlas update: gene and protein expression in multiple species. - Pablo A. Moreno; Silvie Fexova; Nancy George; Jonathan R. Manning; Zhichao Miao; Suhaib Mohammed; Alfonso Muñoz-Pomer Fuentes; Anja Füllgrabe; Yalan Bi; Natassja Bush; Haider Iqbal; Upendra Kumbham; et al. (Nucleic Acids Res., 2022)

Ribocentre: a database of ribozymes. - Jie Deng; Yaohuang Shi; Xuemei Peng; Yuanlin He; Xiaoxue Chen; Mengxiao Li; Xiaowei Lin; Wenjian Liao; Yuanyin Huang; Taijiao Jiang; David M. J. Lilley; Zhichao Miao; et al. (Nucleic Acids Res., 2023)