ThreaDom: extracting protein domain boundary information from multiple threading alignments. - Zhidong Xue; Dong Xu; Yan Wang; Yang Zhang 040 (Bioinform., 2013)

NeuroPep: a comprehensive resource of neuropeptides. - Yan Wang; Mingxia Wang; Sanwen Yin; Richard Jang; Jian Wang; Zhidong Xue; Tao Xu (Database J. Biol. Databases Curation, 2015)

I-TASSER-MR: automated molecular replacement for distant-homology proteins using iterative fragment assembly and progressive sequence truncation. - Yan Wang; Jouko Virtanen; Zhidong Xue; Yang Zhang 040 (Nucleic Acids Res., 2017)

ThreaDomEx: a unified platform for predicting continuous and discontinuous protein domains by multiple-threading and segment assembly. - Yan Wang; Jian Wang; Ruiming Li; Qiang Shi; Zhidong Xue; Yang Zhang 040 (Nucleic Acids Res., 2017)

Evaluation of Lightweight Local Descriptors for Level Ground Navigation with Monocular SLAM. - Weiya Chen; Yulin Wan; Shiqi Ou; Zhidong Xue (PRCV (4), 2018)

StraPep: a structure database of bioactive peptides. - Jian Wang; Tailang Yin; Xuwen Xiao; Dan He; Zhidong Xue; Xinnong Jiang; Yan Wang (Database J. Biol. Databases Curation, 2018)

DNN-Dom: predicting protein domain boundary from sequence alone by deep neural network. - Qiang Shi; Weiya Chen; Siqi Huang; Fanglin Jin; Yinghao Dong; Yan Wang; Zhidong Xue (Bioinform., 2019)

pmTM-align: scalable pairwise and multiple structure alignment with Apache Spark and OpenMP. - Weiya Chen; Chun Yao; Yingzhong Guo; Yan Wang; Zhidong Xue (BMC Bioinform., 2020)

A Survey on Hand Pose Estimation with Wearable Sensors and Computer-Vision-Based Methods. - Weiya Chen; Chenchen Yu; Chenyu Tu; Zehua Lyu; Jing Tang; Shiqi Ou; Yan Fu; Zhidong Xue (Sensors, 2020)

Deep learning for mining protein data. - Qiang Shi; Weiya Chen; Siqi Huang; Yan Wang; Zhidong Xue (Briefings Bioinform., 2021)

NeuroPred-PLM: an interpretable and robust model for neuropeptide prediction by protein language model. - Lei Wang 205; Chen Huang; Mingxia Wang; Zhidong Xue; Yan Wang (Briefings Bioinform., 2023)