SCDD: a novel single-cell RNA-seq imputation method with diffusion and denoising. - Jian Liu; Yichen Pan; Zhihan Ruan; Jun Guo (Briefings Bioinform., 2022)

AREDCI: Assessing Reproducibility and Differential Chromatin Interactions for ChIA-PET Sequencing Data. - Jialiang Sun; Zhihan Ruan; Chaoyang Yan; Jian Liu (BIBM, 2024)