A benchmark for Affymetrix GeneChip expression measures. - Leslie Cope; Rafael A. Irizarry; Harris A. Jaffee; Zhijin Wu; Terence P. Speed (Bioinform., 2004)

Stochastic Models Inspired by Hybridization Theory for Short Oligonucleotide Arrays. - Zhijin Wu; Rafael A. Irizarry (J. Comput. Biol., 2005)

Comparison of Affymetrix GeneChip expression measures. - Rafael A. Irizarry; Zhijin Wu; Harris A. Jaffee (Bioinform., 2006)

A novel highly accurate log skew normal approximation method to lognormal sum distributions. - Zhijin Wu; Xue Li 002; Robert Husnay; Vasu Chakravarthy; Bin Wang 002; Zhiqiang Wu 001 (WCNC, 2009)

Background Adjustment for DNA Microarrays Using a Database of Microarray Experiments. - Yunxia Sui; Xiaoyue Zhao; Terence P. Speed; Zhijin Wu (J. Comput. Biol., 2009)

Empirical Bayes Analysis of Sequencing-based Transcriptional Profiling without Replicates. - Zhijin Wu; Bethany D. Jenkins; Tatiana A. Rynearson; Sonya T. Dyhrman; Mak A. Saito; Melissa Mercier; LeAnn P. Whitney (BMC Bioinform., 2010)

Subset Quantile Normalization Using Negative Control Features. - Zhijin Wu; Martin J. Aryee (J. Comput. Biol., 2010)

A Low-Complexity Approximation to Lognormal Sum Distributions via Transformed Log Skew Normal Distribution. - Xue Li 002; Zhijin Wu; Vasu Chakravarthy; Zhiqiang Wu 001 (IEEE Trans. Veh. Technol., 2011)

Covariate-defined latent space random effects model. - Andrea Austin; Crystal Linkletter; Zhijin Wu (Soc. Networks, 2013)

PROPER: comprehensive power evaluation for differential expression using RNA-seq. - Hao Wu 003; Chi Wang 003; Zhijin Wu (Bioinform., 2015)

Experimental Design and Power Calculation for RNA-seq Experiments. - Zhijin Wu; Hao Wu 003 (Statistical Genomics, 2016)

Two-phase differential expression analysis for single cell RNA-seq. - Zhijin Wu; Yi Zhang; Michael L. Stitzel; Hao Wu 003 (Bioinform., 2018)

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: bioinformatics towards translational applications. - Xiaoming Liu; Lei Xie 006; Zhijin Wu; Kai Wang 063; Zhongming Zhao; Jianhua Ruan; Degui Zhi (BMC Bioinform., 2018)

Dissecting differential signals in high-throughput data from complex tissues. - Ziyi Li 001; Zhijin Wu; Peng Jin; Hao Wu 003 (Bioinform., 2019)

Simulation, power evaluation and sample size recommendation for single-cell RNA-seq. - Kenong Su; Zhijin Wu; Hao Wu 003 (Bioinform., 2020)

Detecting m6A methylation regions from Methylated RNA Immunoprecipitation Sequencing. - Zhenxing Guo; Andrew M. Shafik; Peng Jin; Zhijin Wu; Hao Wu 003 (Bioinform., 2021)

Accurate Detection of MicroRNAs from NanoString nCounter with a Latent Mixture Model. - Chang Yu; Zhijin Wu (BIBM, 2023)

NewsSense: Reference-free Verification via Cross-document Comparison. - Jeremiah Milbauer; Ziqi Ding; Zhijin Wu; Tongshuang Wu (EMNLP (Demos), 2023)

LLMs as Workers in Human-Computational Algorithms? Replicating Crowdsourcing Pipelines with LLMs. - Tongshuang Wu; Haiyi Zhu; Maya Albayrak; Alexis Axon; Amanda Bertsch; Wenxing Deng; Ziqi Ding; Bill Guo; Sireesh Gururaja; Tzu-Sheng Kuo; Jenny T. Liang; Ryan Liu 001; et al. (CoRR, 2023)

From Nuisance to News Sense: Augmenting the News with Cross-Document Evidence and Context. - Jeremiah Milbauer; Ziqi Ding; Zhijin Wu; Tongshuang Wu (CoRR, 2023)

Target-oriented Reference Construction for supervised cell type identification in scRNA-seq. - Xin Wei; Wenjing Ma; Zhijin Wu; Hao Wu 003 (BIBM, 2024)

m6A peak calling accounting for varying sequencing bias across regions and samples. - Lanyu Zhang; Zhenxing Guo; Zhaohui Qin; Zhijin Wu (BIBM, 2024)

LLMs as Workers in Human-Computational Algorithms? Replicating Crowdsourcing Pipelines with LLMs. - Tongshuang Wu; Haiyi Zhu; Maya Albayrak; Alexis Axon; Amanda Bertsch; Wenxing Deng; Ziqi Ding; Boyuan Guo; Sireesh Gururaja; Tzu-Sheng Kuo; Jenny T. Liang; Ryan Liu 001; et al. (CHI Extended Abstracts, 2025)