Robustness Analysis of the IFN-y Induced JAK-STAT Signaling Pathway. - Zhike Zi; Zhirong Sun (J. Comput. Sci. Technol., 2005)

SBML-PET: a Systems Biology Markup Language-based parameter estimation tool. - Zhike Zi; Edda Klipp (Bioinform., 2006)

SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool. - Zhike Zi; Yanan Zheng; Ann E. Rundell; Edda Klipp (BMC Bioinform., 2008)

SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models. - Zhike Zi (Bioinform., 2011)

Liebig's law of the minimum in the TGF-β/SMAD pathway. - Yuchao Li; Difan Deng; Chris Tina Höfer; Jihye Kim; Won Do Heo; Quanbin Xu; Xuedong Liu; Zhike Zi (PLoS Comput. Biol., 2024)

COCOA: A Framework for Fine-scale Mapping of Cell-type-specific Chromatin Compartments Using Epigenomic Information. - Kai Li; Ping Zhang 027; Jinsheng Xu; Zi Wen; Junying Zhang; Zhike Zi; Li Li 057 (Genom. Proteom. Bioinform., 2025)