Microarray platform consistency is revealed by biologically functional analysis of gene expression profiles. - Zhiguang Li; Zhenqiang Su; Zhining Wen; Leming M. Shi; Tao Chen (BMC Bioinform., 2009)

In silico method for systematic analysis of feature importance in microRNA-mRNA interactions. - Jiamin Xiao; Yizhou Li; Kelong Wang; Zhining Wen; Menglong Li; Lifang Zhang; Xuanmin Guang (BMC Bioinform., 2009)

Evaluation of gene expression data generated from expired Affymetrix GeneChip® microarrays using MAQC reference RNA samples. - Zhining Wen; Charles Wang; Quan Shi; Ying Huang; Zhenqiang Su; Huixiao Hong; Weida Tong; Leming Shi (BMC Bioinform., 2010)

The MicroArray Quality Control (MAQC) Project and Cross-Platform Analysis of Microarray Data. - Zhining Wen; Zhenqiang Su; Jie Liu; Baitang Ning; Lei Guo 006; Weida Tong; Leming M. Shi (Handbook of Statistical Bioinformatics, 2011)

Predicting disease-associated substitution of a single amino acid by analyzing residue interactions. - Yizhou Li; Zhining Wen; Jiamin Xiao; Hui Yin; Lezheng Yu; Li Yang; Menglong Li (BMC Bioinform., 2011)

Investigating the concordance of Gene Ontology terms reveals the intra- and inter-platform reproducibility of enrichment analysis. - Lifang Zhang; Juan Zhang; Gang Yang; Di Wu; Lina Jiang; Zhining Wen; Menglong Li (BMC Bioinform., 2013)

Improving the prediction of chemotherapeutic sensitivity of tumors in breast cancer via optimizing the selection of candidate genes. - Lina Jiang; Liqiu Huang; Qifan Kuang; Juan Zhang; Menglong Li; Zhining Wen; Li He (Comput. Biol. Chem., 2014)

Mutation status coupled with RNA-sequencing data can efficiently identify important non-significantly mutated genes serving as diagnostic biomarkers of endometrial cancer. - Keqin Liu; Li He; Zhichao Liu; Junmei Xu; Yuan Liu; Qifan Kuang; Zhining Wen; Menglong Li (BMC Bioinform., 2017)

Bipartite network analysis reveals metabolic gene expression profiles that are highly associated with the clinical outcomes of acute myeloid leukemia. - Fanfan Xie; Mingxiong He; Li He; Keqin Liu; Menglong Li; Guoquan Hu; Zhining Wen (Comput. Biol. Chem., 2017)

Uncovering the prognostic gene signatures for the improvement of risk stratification in cancers by using deep learning algorithm coupled with wavelet transform. - Yiru Zhao; Yifan Zhou; Yuan Liu; Yinyi Hao; Menglong Li; Xuemei Pu; Chuan Li 002; Zhining Wen (BMC Bioinform., 2020)