Enrichment of transcriptional regulatory sites in non-coding genomic region. - Wen Xue; Jin Wang; Zhirong Shen; Huaiqiu Zhu (Bioinform., 2004)

Secure storage system and key technologies. - Jiwu Shu; Zhirong Shen; Wei Xue; Yingxun Fu (ASP-DAC, 2013)

Preferred keyword search over encrypted data in cloud computing. - Zhirong Shen; Jiwu Shu; Wei Xue (IWQoS, 2013)

HV Code: An All-Around MDS Code to Improve Efficiency and Reliability of RAID-6 Systems. - Zhirong Shen; Jiwu Shu (DSN, 2014)

Keyword search with access control over encrypted data in cloud computing. - Zhirong Shen; Jiwu Shu; Wei Xue (IWQoS, 2014)

Shield: A stackable secure storage system for file sharing in public storage. - Jiwu Shu; Zhirong Shen; Wei Xue (J. Parallel Distributed Comput., 2014)

EC-FRM: An Erasure Coding Framework to Speed Up Reads for Erasure Coded Cloud Storage Systems. - Yingxun Fu; Jiwu Shu; Zhirong Shen (ICPP, 2015)

Seek-Efficient I/O Optimization in Single Failure Recovery for XOR-coded Storage Systems. - Zhirong Shen; Jiwu Shu; Yingxun Fu (SRDS, 2015)

Reconsidering Single Failure Recovery in Clustered File Systems. - Zhirong Shen; Jiwu Shu; Patrick P. C. Lee (DSN, 2016)

Efficient routing for cooperative data regeneration in heterogeneous storage networks. - Zhirong Shen; Patrick P. C. Lee; Jiwu Shu (IWQoS, 2016)

Encoding-Aware Data Placement for Efficient Degraded Reads in XOR-Coded Storage Systems. - Zhirong Shen; Patrick P. C. Lee; Jiwu Shu; Wenzhong Guo (SRDS, 2016)

Reconsidering Single Disk Failure Recovery for Erasure Coded Storage Systems: Optimizing Load Balancing in Stack-Level. - Yingxun Fu; Jiwu Shu; Zhirong Shen; Guangyan Zhang (IEEE Trans. Parallel Distributed Syst., 2016)

HV Code: An All-Around MDS Code for RAID-6 Storage Systems. - Zhirong Shen; Jiwu Shu; Yingxun Fu (IEEE Trans. Parallel Distributed Syst., 2016)

Parity-Switched Data Placement: Optimizing Partial Stripe Writes in XOR-Coded Storage Systems. - Zhirong Shen; Jiwu Shu; Yingxun Fu (IEEE Trans. Parallel Distributed Syst., 2016)

Correlation-Aware Stripe Organization for Efficient Writes in Erasure-Coded Storage Systems. - Zhirong Shen; Patrick P. C. Lee; Jiwu Shu; Wenzhong Guo (SRDS, 2017)

Short Code: An Efficient RAID-6 MDS Code for Optimizing Degraded Reads and Partial Stripe Writes. - Yingxun Fu; Jiwu Shu; Xianghong Luo; Zhirong Shen; Qingda Hu (IEEE Trans. Computers, 2017)

Seek-Efficient I/O Optimization in Single Failure Recovery for XOR-Coded Storage Systems. - Zhirong Shen; Jiwu Shu; Patrick P. C. Lee; Yingxun Fu (IEEE Trans. Parallel Distributed Syst., 2017)

Energy Management for Smart Base Stations with Heterogeneous Energy Harvesting Devices. - Guanglin Zhang; Mengjiao Qin; Zhirong Shen; Lin Wang 022 (GLOBECOM, 2018)

Energy Management for Multi-User Mobile-Edge Computing Systems with Energy Harvesting Devices and QoS Constraints. - Guanglin Zhang; Yan Chen 030; Zhirong Shen; Lin Wang 022 (ICCCN, 2018)

Cross-Rack-Aware Updates in Erasure-Coded Data Centers. - Zhirong Shen; Patrick P. C. Lee (ICPP, 2018)

Preferred search over encrypted data. - Zhirong Shen; Jiwu Shu; Wei Xue (Frontiers Comput. Sci., 2018)

Encoding-Aware Data Placement for Efficient Degraded Reads in XOR-Coded Storage Systems: Algorithms and Evaluation. - Zhirong Shen; Patrick P. C. Lee; Jiwu Shu; Wenzhong Guo (IEEE Trans. Parallel Distributed Syst., 2018)

Fast Predictive Repair in Erasure-Coded Storage. - Zhirong Shen; Xiaolu Li 002; Patrick P. C. Lee (DSN, 2019)

Cost Minimization for Geo-Distributed Data Centers with Renewable Resources and Energy Storages. - Shun Zhang; Zhirong Shen; Guanglin Zhang (GLOBECOM, 2019)

LSTM-Aided Reinforcement Learning for Energy Management in Microgrid with Energy Storage and EV Charging. - Tongjie Cao; Zhirong Shen; Guanglin Zhang (MSN, 2019)

Parity-Only Caching for Robust Straggler Tolerance. - Mi Zhang 007; Qiuping Wang; Zhirong Shen; Patrick P. C. Lee (MSST, 2019)

Distributed Energy Management for Multiuser Mobile-Edge Computing Systems With Energy Harvesting Devices and QoS Constraints. - Guanglin Zhang; Yan Chen 030; Zhirong Shen; Lin Wang 022 (IEEE Internet Things J., 2019)

Energy Scheduling for Networked Microgrids With Co-Generation and Energy Storage. - Guanglin Zhang; Zhirong Shen; Zongpeng Li; Lin Wang 022 (IEEE Internet Things J., 2019)

Correlation-Aware Stripe Organization for Efficient Writes in Erasure-Coded Storage: Algorithms and Evaluation. - Zhirong Shen; Patrick P. C. Lee; Jiwu Shu; Wenzhong Guo (IEEE Trans. Parallel Distributed Syst., 2019)

EaD: a Collision-free and High Performance Deduplication Scheme for Flash Storage Systems. - Suzhen Wu; Jindong Zhou; Weidong Zhu 002; Hong Jiang 001; Zhijie Huang; Zhirong Shen; Bo Mao (ICCD, 2020)

Toward Adaptive Disk Failure Prediction via Stream Mining. - Shujie Han 001; Patrick P. C. Lee; Zhirong Shen; Cheng He; Yi Liu; Tao Huang (ICDCS, 2020)

On the Optimal Repair-Scaling Trade-off in Locally Repairable Codes. - Si Wu 003; Zhirong Shen; Patrick P. C. Lee (INFOCOM, 2020)

Optimal Encoding and Decoding Algorithms for the RAID-6 Liberation Codes. - Zhijie Huang; Hong Jiang 001; Zhirong Shen; Hao Che; Nong Xiao 001; Ning Li 010 (IPDPS, 2020)

ClusterSR: Cluster-Aware Scattered Repair in Erasure-Coded Storage. - Zhirong Shen; Jiwu Shu; Zhijie Huang; Yingxun Fu (IPDPS, 2020)

Device and Placement Aware Framework to optimize Single Failure Recoveries and Reads for Erasure Coded Storage System with Heterogeneous Storage Devices. - Yingxun Fu; Xun Liu; Jiwu Shu; Zhirong Shen; Shiye Zhang; Jun Wu; Jianyong Duan; Li Ma 007 (SRDS, 2020)

Enabling I/O-Efficient Redundancy Transitioning in Erasure-Coded KV Stores via Elastic Reed-Solomon Codes. - Si Wu 003; Zhirong Shen; Patrick P. C. Lee (SRDS, 2020)

Online Energy Management for Microgrids With CHP Co-Generation and Energy Storage. - Guanglin Zhang; Zhirong Shen; Lin Wang 022 (IEEE Trans. Control. Syst. Technol., 2020)

Cross-Rack-Aware Single Failure Recovery for Clustered File Systems. - Zhirong Shen; Patrick P. C. Lee; Jiwu Shu; Wenzhong Guo (IEEE Trans. Dependable Secur. Comput., 2020)

Cross-Rack-Aware Updates in Erasure-Coded Data Centers: Design and Evaluation. - Zhirong Shen; Patrick P. C. Lee (IEEE Trans. Parallel Distributed Syst., 2020)

Receptive-Field and Switch-Matrices Based ReRAM Accelerator with Low Digital-Analog Conversion for CNNs. - Yingxun Fu; Xun Liu; Jiwu Shu; Zhirong Shen; Shiye Zhang; Jun Wu; Li Ma 007 (DATE, 2021)

Accelerating Sub-Block Erase in 3D NAND Flash Memory. - Hongbin Gong; Zhirong Shen; Jiwu Shu (ICCD, 2021)

SimiEncode: A Similarity-based Encoding Scheme to Improve Performance and Lifetime of Non-Volatile Main Memory. - Suzhen Wu; Jiapeng Wu; Zhirong Shen; Zhihao Zhang; Zuocheng Wang; Bo Mao (ICCD, 2021)

When Delta Sync Meets Message-Locked Encryption: a Feature-based Delta Sync Scheme for Encrypted Cloud Storage. - Suzhen Wu; Zhanhong Tu; Zuocheng Wang; Zhirong Shen; Bo Mao (ICDCS, 2021)

Optimal Rack-Coordinated Updates in Erasure-Coded Data Centers. - Guowen Gong; Zhirong Shen; Suzhen Wu; Xiaolu Li 002; Patrick P. C. Lee (INFOCOM, 2021)

CAGC: A Content-aware Garbage Collection Scheme for Ultra-Low Latency Flash-based SSDs. - Suzhen Wu; Chunfeng Du; Haijun Li; Hong Jiang 001; Zhirong Shen; Bo Mao (IPDPS, 2021)

Boosting Full-Node Repair in Erasure-Coded Storage. - Shiyao Lin; Guowen Gong; Zhirong Shen; Patrick P. C. Lee; Jiwu Shu (USENIX ATC, 2021)

Cluster-Aware Scattered Repair in Erasure-Coded Storage: Design and Analysis. - Zhirong Shen; Shiyao Lin; Jiwu Shu; Chengxin Xie; Zhijie Huang; Yingxun Fu (IEEE Trans. Computers, 2021)

Real-Time Energy Management for Microgrid With EV Station and CHP Generation. - Zhirong Shen; Changle Wu; Lin Wang 022; Guanglin Zhang (IEEE Trans. Netw. Sci. Eng., 2021)

Joint Service Caching, Computation Offloading and Resource Allocation in Mobile Edge Computing Systems. - Guanglin Zhang; Shun Zhang; Wenqian Zhang; Zhirong Shen; Lin Wang 022 (IEEE Trans. Wirel. Commun., 2021)

Accelerating Garbage Collection of 3D Flash Memory via Exploiting Inter-Channel Parallelism. - Hongbin Gong; Zhirong Shen; Jiwu Shu (ICCD, 2022)

POCache: Toward robust and configurable straggler tolerance with parity-only caching. - Mi Zhang 007; Qiuping Wang; Zhirong Shen; Patrick P. C. Lee (J. Parallel Distributed Comput., 2022)

Distributed Energy Management for Multiple Data Centers With Renewable Resources and Energy Storages. - Guanglin Zhang; Shun Zhang; Wenqian Zhang; Zhirong Shen; Lin Wang 022 (IEEE Trans. Cloud Comput., 2022)

Intelligent Energy Scheduling in Renewable Integrated Microgrid With Bidirectional Electricity-to-Hydrogen Conversion. - Ming Chen; Zhirong Shen; Lin Wang 022; Guanglin Zhang (IEEE Trans. Netw. Sci. Eng., 2022)

Competitive Online Stay-or-Switch Algorithms With Minimum Commitment and Switching Cost. - Zhirong Shen; Guanglin Zhang (IEEE/ACM Trans. Netw., 2022)

Fast Proactive Repair in Erasure-Coded Storage: Analysis, Design, and Implementation. - Xiaolu Li 002; Keyun Cheng; Zhirong Shen; Patrick P. C. Lee (IEEE Trans. Parallel Distributed Syst., 2022)

Optimal Repair-Scaling Trade-off in Locally Repairable Codes: Analysis and Evaluation. - Si Wu 003; Zhirong Shen; Patrick P. C. Lee; Yinlong Xu (IEEE Trans. Parallel Distributed Syst., 2022)

Two-Timescale Mobile User Association and Hybrid Generator On/Off Control for Green Cellular Networks With Energy Storage. - Zhirong Shen; Guanglin Zhang (IEEE Trans. Veh. Technol., 2022)

The Synergistic Integration of Computer Education and Research. - Zhirong Shen (ACM TUR-C, 2023)

Redesigning High-Performance LSM-based Key-Value Stores with Persistent CPU Caches. - Yijie Zhong; Zhirong Shen; Zixiang Yu; Jiwu Shu (ICDE, 2023)

CCFlash: A Correlation-Aware Compression Approach in Flash Memory. - Jianqiang Chen; Qiongxia Huang; Jiebin Zhai; Zhirong Shen (SAC, 2023)

Two Time-Scale Energy and Spectrum Allocation for MEC Networks With Hybrid Energy Supplies. - Wenqian Zhang; Zhirong Shen; Mengjiao Qin; Guanglin Zhang (IEEE Trans. Netw. Sci. Eng., 2023)

StreamDFP: A General Stream Mining Framework for Adaptive Disk Failure Prediction. - Shujie Han 001; Patrick P. C. Lee; Zhirong Shen; Cheng He; Yi Liu; Tao Huang (IEEE Trans. Computers, 2023)

Optimal Rack-Coordinated Updates in Erasure-Coded Data Centers: Design and Analysis. - Guowen Gong; Zhirong Shen; Liang Chen; Suzhen Wu; Xiaolu Li 002; Patrick P. C. Lee; Zhiguo Wan; Jiwu Shu (IEEE Trans. Computers, 2023)

FASTSync: A FAST Delta Sync Scheme for Encrypted Cloud Storage in High-bandwidth Network Environments. - Suzhen Wu; Zhanhong Tu; Yuxuan Zhou; Zuocheng Wang; Zhirong Shen; Wei Chen; Wei Wang 424; Weichun Wang; Bo Mao (ACM Trans. Storage, 2023)

ZUFS: Enhancing Stability and Endurance in Mobile Devices with Integrated Zoned Namespaces in Universal Flash Storage. - Pengbo Yan; Bohong Zhu; Zhirong Shen; Jiwu Shu; Jiadong Yang (CCGrid, 2024)

Hawkeyes: Addressing Weak Memory Order in Program Migration Based on Instruction Windows. - Zhangqi Zhu; Yuhui Cai; Binbin Xu; Pingchao Yang; Jicheng Chen; Zhirong Shen (CHEOPS@EuroSys, 2024)

Mitigating Write Disturbance in Non-Volatile Memory via Coupling Machine Learning with Out-of-Place Updates. - Ronglong Wu; Zhirong Shen; Zhiwei Yang; Jiwu Shu (HPCA, 2024)

Calibration Algorithm for a 3D Scanner Based on 2D Lidar and Visible Light Cameras. - Vyacheslav Gulvanskii; Maxim V. Minenko; Georgii Gavrilov; Lev Bratchenko; Dmitrii I. Kaplun; Zhirong Shen (MECO, 2024)

Removing Obstacles before Breaking Through the Memory Wall: A Close Look at HBM Errors in the Field. - Ronglong Wu; Shuyue Zhou; Jiahao Lu; Zhirong Shen; Zikang Xu; Jiwu Shu; Kunlin Yang; Feilong Lin; Yiming Zhang (USENIX ATC, 2024)

UniMem: Redesigning Disaggregated Memory within A Unified Local-Remote Memory Hierarchy. - Yijie Zhong; Minqiang Zhou; Zhirong Shen; Jiwu Shu (USENIX ATC, 2024)

Minimum Distance Calculation Method for Collision Issues in Lifting Construction Scenarios. - Bin Yang 029; Haoran Zhang; Zhirong Shen (J. Comput. Civ. Eng., 2024)

Elastic Reed-Solomon Codes for Efficient Redundancy Transitioning in Distributed Key-Value Stores. - Si Wu 003; Zhirong Shen; Patrick P. C. Lee; Zhiwei Bai; Yinlong Xu (IEEE/ACM Trans. Netw., 2024)

Relieving Write Disturbance for Phase Change Memory With RESET-Aware Data Encoding. - Ronglong Wu; Zhirong Shen; Jianqiang Chen; Chengshuo Zheng; Zhiwei Yang; Jiwu Shu (IEEE Trans. Computers, 2024)

Characterizing and Optimizing LDPC Performance on 3D NAND Flash Memories. - Qiao Li 001; Yu Chen; Guanyu Wu; Yajuan Du; Min Ye; Xinbiao Gan; Jie Zhang 048; Zhirong Shen; Jiwu Shu; Chun Xue 001 (ACM Trans. Archit. Code Optim., 2024)

Achieving Tunable Erasure Coding with Cluster-Aware Redundancy Transitioning. - Feng Zhang; Fulin Nan; Binbin Xu; Zhirong Shen; Jiebin Zhai; Dmitrii I. Kaplun; Jiwu Shu (ACM Trans. Archit. Code Optim., 2024)

Joint Spectrum Sharing and V2V/V2I Task Offloading for Vehicular Edge Computing Networks Based on Coalition Formation Game. - Mengting Huang; Zhirong Shen; Guanglin Zhang (IEEE Trans. Intell. Transp. Syst., 2024)

Extremely-Compressed SSDs with I/O Behavior Prediction. - Xiangyu Yao; Qiao Li 001; Kaihuan Lin; Xinbiao Gan; Jie Zhang 048; Congming Gao; Zhirong Shen; Quanqing Xu; Chuanhui Yang; Jason Xue 001 (ACM Trans. Storage, 2024)

Combined Carbon Capture and Utilization With Peer-to-Peer Energy Trading for Multimicrogrids Using Multiagent Proximal Policy Optimization. - Ming Chen; Zhirong Shen; Lin Wang 022; Guanglin Zhang (IEEE Trans. Control. Netw. Syst., 2024)

A Fail-Slow Detection Framework for HBM Devices. - Zikang Xu; Yiming Zhang 003; Zhirong Shen (ASP-DAC, 2025)

GeminiFS: A Companion File System for GPUs. - Shi Qiu; Weinan Liu; Yifan Hu; Jianqin Yan; Zhirong Shen; Xin Yao; Renhai Chen; Gong Zhang 001; Yiming Zhang (FAST, 2025)

ChameleonEC: Exploiting Tunability of Erasure Coding for Low-Interference Repair. - Yuhui Cai; Shiyao Lin; Zhirong Shen; Jiahui Yang; Jiwu Shu (HPCA, 2025)

AC-Cache: A Memory-Efficient Caching System for Small Objects via Exploiting Access Correlations. - Fulin Nan; Ronglong Wu; Zhirong Shen; Jiahui Yang; Li Cheng; Zheng Chen; Yiming Zhang 003; Jiwu Shu (PPoPP, 2025)

A Survey of the Past, Present, and Future of Erasure Coding for Storage Systems. - Zhirong Shen; Yuhui Cai; Keyun Cheng; Patrick P. C. Lee; Xiaolu Li 002; Yuchong Hu; Jiwu Shu (ACM Trans. Storage, 2025)

TPRepair: Tree-based Pipelined Repair in Clustered Storage Systems. - Jiahui Yang; Fulin Nan; Zhirong Shen; Zhisheng Chen 002; Yuhui Cai; Dmitrii I. Kaplun; Xiaoli Wang 002; Quanqing Xu; Chuanhui Yang; Jiwu Shu (ACM Trans. Archit. Code Optim., 2025)