The pattern of common supersecondary structure (motifs) in protein database. - Zhirong Sun; Tom L. Blundell (HICSS (5), 1995)

Support vector machine approach for protein subcellular localization prediction. - Sujun Hua; Zhirong Sun (Bioinform., 2001)

A Novel Method for Protein Subcellular Localization Based on Boosting and Probabilistic Neural Network.. - Jian Guo 002; Yuanlie Lin; Zhirong Sun (APBC, 2004)

HMMGEP: clustering gene expression data using hidden Markov models. - Xinglai Ji; Yuan Yuan; Jesse Li-Ling; Yanda Li; Zhirong Sun (Bioinform., 2004)

BSubLoc: database of protein subcellular localization. - Tao Guo; Sujun Hua; Xinglai Ji; Zhirong Sun (Nucleic Acids Res., 2004)

A novel method for protein subcellular localization: Combining residue-couple model and SVM. - Jian Guo 002; Yuanlie Lin; Zhirong Sun (APBC, 2005)

Robustness Analysis of the IFN-y Induced JAK-STAT Signaling Pathway. - Zhike Zi; Zhirong Sun (J. Comput. Sci. Technol., 2005)

SubLoc: a server/client suite for protein subcellular location based on SOAP. - Hu Chen; Ni Huang; Zhirong Sun (Bioinform., 2006)

NBA-Palm: prediction of palmitoylation site implemented in Naïve Bayes algorithm. - Yu Xue 001; Hu Chen; Changjiang Jin; Zhirong Sun; Xuebiao Yao (BMC Bioinform., 2006)

Protein sub-cellular localisation prediction by analysis of short-range residue correlations. - Jian Guo 002; Yuanlie Lin; Zhirong Sun (Int. J. Bioinform. Res. Appl., 2006)

MeMo: a web tool for prediction of protein methylation modifications. - Hu Chen; Yu Xue 001; Ni Huang; Xuebiao Yao; Zhirong Sun (Nucleic Acids Res., 2006)

Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle. - Jin Wang; Bo Huang; Xuefeng Xia; Zhirong Sun (PLoS Comput. Biol., 2006)

DBMLoc: a Database of proteins with multiple subcellular localizations. - Song Zhang; Xuefeng Xia; Jincheng Shen; Yun Zhou; Zhirong Sun (BMC Bioinform., 2008)

Exploring phenotype-associated modules in an oral cavity tumor using an integrated framework. - Zhirong Sun; Jie Luo; Yun Zhou; Junjie Luo 002; Ke Liu; Wenting Li (Bioinform., 2009)

MICAlign: a sequence-to-structure alignment tool integrating multiple sources of information in conditional random fields. - Xuefeng Xia; Song Zhang; Yu Su; Zhirong Sun (Bioinform., 2009)

Inferring protein function by domain context similarities in protein-protein interaction networks. - Song Zhang; Hu Chen; Ke Liu; Zhirong Sun (BMC Bioinform., 2009)

Cancer core modules identification through genomic and transcriptomic changes correlation detection at network level. - Wenting Li; Rui Wang; Linfu Bai; Zhangming Yan; Zhirong Sun (BMC Syst. Biol., 2012)

Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis. - Ke Liu; Zhangming Yan; Yuchao Li; Zhirong Sun (Bioinform., 2013)

The 7th National Conference on Bioinformatics and Systems Biology of China. - Zhirong Sun; Kui Hua; Xuegong Zhang; Feng-Biao Guo; Jian Huang 004 (Quant. Biol., 2017)

txCoords: A Novel Web Application for Transcriptomic Peak Re-Mapping. - Zhangming Yan; Ke Liu; Shunian Xiang; Zhirong Sun (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

PyMut: A Web Tool for Overlapping Gene Loss-of-Function Mutation Design. - Ke Liu; Sha Hou; Junbiao Dai; Zhirong Sun (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)