Queries over Large-Scale Incremental Data of Hybrid Granularities. - Xutian Zhuang; Gansen Zhao; Xinming Wang; Ruihua Nie; Zhirui Liao; Chengchuang Lin; Zhenyu Li (CCBD, 2016)

Queries over Large-Scale Log Data of Hybrid Granularities. - Gansen Zhao; Xutian Zhuang; Xinming Wang; Ruihua Nie; Zhirui Liao; Chengchuang Lin; Zhenyu Li (ISPDC, 2016)

DeepDock: Enhancing Ligand-protein Interaction Prediction by a Combination of Ligand and Structure Information. - Zhirui Liao; Ronghui You; Xiaodi Huang; Xiaojun Yao; Tao Huang; Shanfeng Zhu (BIBM, 2019)

Drug3D-DTI: Improved Drug-target Interaction Prediction by Incorporating Spatial Information of Small Molecules. - Zhirui Liao; Xiaodi Huang; Hiroshi Mamitsuka; Shanfeng Zhu (BIBM, 2021)

Sc2Mol: a scaffold-based two-step molecule generator with variational autoencoder and transformer. - Zhirui Liao; Lei Xie; Hiroshi Mamitsuka; Shanfeng Zhu (Bioinform., 2023)

ContraDTI: Improved drug-target interaction prediction via multi-view contrastive learning. - Zhirui Liao; Lei Xie; Shanfeng Zhu (Artif. Intell. Medicine, 2025)