iDMer: an integrative and mechanism-driven response system for identifying compound interventions for sudden virus outbreak. - Zhiting Wei; Yuli Gao; Fangliangzi Meng; Xin Chen; Yukang Gong; Chenyu Zhu; Bin Ju; Chao Zhang; Zhongmin Liu; Qi Liu 019 (Briefings Bioinform., 2021)

DrSim: Similarity Learning for Transcriptional Phenotypic Drug Discovery. - Zhiting Wei; Sheng Zhu; Xiaohan Chen; Chen-Yu Zhu; Bin Duan; Qi Liu 019 (Genom. Proteom. Bioinform., 2022)

Pan-Peptide Meta Learning for T-cell receptor-antigen binding recognition. - Yicheng Gao; Yuli Gao; Yuxiao Fan; Chengyu Zhu; Zhiting Wei; Chi Zhou 003; Guohui Chuai; Qinchang Chen; He Zhang; Qi Liu 019 (Nat. Mac. Intell., 2023)

Toward subtask-decomposition-based learning and benchmarking for predicting genetic perturbation outcomes and beyond. - Yicheng Gao; Zhiting Wei; Kejing Dong; Ke Chen; Jingya Yang; Guohui Chuai; Qi Liu 019 (Nat. Comput. Sci., 2024)