PepCyber: P PEP: a database of human protein-protein interactions mediated by phosphoprotein-binding domains. - Wuming Gong; Dihan Zhou; Yongliang Ren; Yejun Wang; Zhixiang Zuo; Yanping Shen; Feifei Xiao; Qi Zhu; Ailing Hong; Xiaochuan Zhou; Xiaolian Gao; Tongbin Li (Nucleic Acids Res., 2008)

miRecords: an integrated resource for microRNA-target interactions. - Feifei Xiao; Zhixiang Zuo; Guoshuai Cai; Shuli Kang; Xiaolian Gao; Tongbin Li (Nucleic Acids Res., 2009)

IBS: an illustrator for the presentation and visualization of biological sequences. - Wenzhong Liu; Yubin Xie; Jiyong Ma; Xiaotong Luo; Peng Nie; Zhixiang Zuo; Urs Lahrmann; Qi Zhao; Yueyuan Zheng; Yong Zhao 013; Yu Xue 001; Jian Ren 002 (Bioinform., 2015)

DeepNitro: Prediction of Protein Nitration and Nitrosylation Sites by Deep Learning. - Yubin Xie; Xiaotong Luo; Yupeng Li; Li Chen; Wenbin Ma; Junjiu Huang; Jun Cui; Yong Zhao 013; Yu Xue 001; Zhixiang Zuo; Jian Ren 002 (Genom. Proteom. Bioinform., 2018)

m6AVar: a database of functional variants involved in m6A modification. - Yueyuan Zheng; Peng Nie; Di Peng; Zhihao He; Mengni Liu; Yubin Xie; Yanyan Miao; Zhixiang Zuo; Jian Ren 002 (Nucleic Acids Res., 2018)

CrossICC: iterative consensus clustering of cross-platform gene expression data without adjusting batch effect. - Qi Zhao; Yu Sun; Zekun Liu; Hongwan Zhang; Xingyang Li; Kaiyu Zhu; Zexian Liu; Jian Ren 002; Zhixiang Zuo (Briefings Bioinform., 2020)

BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancers. - Zhixiang Zuo; Huanjing Hu; Qingxian Xu; Xiaotong Luo; Di Peng; Kaiyu Zhu; Qi Zhao; Yubin Xie; Jian Ren 002 (Nucleic Acids Res., 2020)

M6A2Target: a comprehensive database for targets of m6A writers, erasers and readers. - Shuang Deng; Hongwan Zhang; Kaiyu Zhu; Xingyang Li; Ying Ye; Rui Li; Xuefei Liu; Dongxin Lin; Zhixiang Zuo; Jian Zheng (Briefings Bioinform., 2021)

RMVar: an updated database of functional variants involved in RNA modifications. - Xiaotong Luo; Huiqin Li; Jiaqi Liang; Qi Zhao; Yubin Xie; Jian Ren 002; Zhixiang Zuo (Nucleic Acids Res., 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Shuhui Song; Lina Ma; et al. (Nucleic Acids Res., 2021)

Deciphering clonal dynamics and metastatic routines in a rare patient of synchronous triple-primary tumors and multiple metastases with MPTevol. - Qingjian Chen; Qi-Nian Wu; Yu-Ming Rong; Shixiang Wang; Zhixiang Zuo; Long Bai 006; Bei Zhang; Shuqiang Yuan; Qi Zhao (Briefings Bioinform., 2022)

MeRIPseqPipe: an integrated analysis pipeline for MeRIP-seq data based on Nextflow. - Xiaoqiong Bao; Kaiyu Zhu; Xuefei Liu; Zhihang Chen 002; Ziwei Luo; Qi Zhao; Jian Ren 002; Zhixiang Zuo (Bioinform., 2022)

TIRSF: a web server for screening gene signatures to predict Tumor immunotherapy response. - Li Chen; Tianjian Chen; Ya Zhang; Haichen Lin; Ruihan Wang; Yihang Wang; Hongyu Li; Zhixiang Zuo; Jian Ren 002; Yubin Xie (Nucleic Acids Res., 2022)

RPS: a comprehensive database of RNAs involved in liquid-liquid phase separation. - Mengni Liu; Huiqin Li; Xiaotong Luo; Jieyi Cai; Tianjian Chen; Yubin Xie; Jian Ren 002; Zhixiang Zuo (Nucleic Acids Res., 2022)

SPENCER: a comprehensive database for small peptides encoded by noncoding RNAs in cancer patients. - Xiaotong Luo; Yuantai Huang; Huiqin Li; Yihai Luo; Zhixiang Zuo; Jian Ren 002; Yubin Xie (Nucleic Acids Res., 2022)

IBS 2.0: an upgraded illustrator for the visualization of biological sequences. - Yubin Xie; Huiqin Li; Xiaotong Luo; Hongyu Li; Qiuyuan Gao; Luowanyue Zhang; Yuyan Teng; Qi Zhao; Zhixiang Zuo; Jian Ren 002 (Nucleic Acids Res., 2022)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Jingyao Zeng; Yadong Zhang; et al. (Nucleic Acids Res., 2022)

dSCOPE: a software to detect sequences critical for liquid-liquid phase separation. - Kai Yu 011; Zekun Liu; Haoyang Cheng; Shihua Li; Qingfeng Zhang; Jia Liu; Huai-Qiang Ju; Zhixiang Zuo; Qi Zhao; Shiyang Kang; Zexian Liu (Briefings Bioinform., 2023)

RM2Target: a comprehensive database for targets of writers, erasers and readers of RNA modifications. - Xiaoqiong Bao; Yin Zhang; Huiqin Li; Yuyan Teng; Lixia Ma; Zhihang Chen 002; Xiaotong Luo; Jian Zheng; An Zhao; Jian Ren 002; Zhixiang Zuo (Nucleic Acids Res., 2023)

TIGER: A Web Portal of Tumor Immunotherapy Gene Expression Resource. - Zhihang Chen 002; Ziwei Luo; Di Zhang; Huiqin Li; Xuefei Liu; Kaiyu Zhu; Hongwan Zhang; Zongping Wang; Penghui Zhou; Jian Ren 002; An Zhao; Zhixiang Zuo (Genom. Proteom. Bioinform., 2023)

AStruct: detection of allele-specific RNA secondary structure in structuromic probing data. - Qingru Xu; Xiaoqiong Bao; Zhuobin Lin; Lin Tang; Li-na He; Jian Ren 002; Zhixiang Zuo; Kunhua Hu (BMC Bioinform., 2024)