A Flexible Algorithm for Pairwise Protein Structure Alignment. - Zhiyu Zhao; Bin Fu (BIOCOMP, 2007)

Non-breaking Similarity of Genomes with Gene Repetitions. - Zhixiang Chen 001; Bin Fu; Jinhui Xu 001; Bo-Ting Yang; Zhiyu Zhao; Binhai Zhu (CPM, 2007)

New Algorithm and Web Server for Finding Proteins with Similar 3D Structures. - Zaixin Lu; Zhiyu Zhao; Sergio García; Bin Fu (BIOCOMP, 2008)

Linear Time Probabilistic Algorithms for the Singular Haplotype Reconstruction Problem from SNP Fragments. - Zhixiang Chen 001; Bin Fu; Robert T. Schweller; Boting Yang; Zhiyu Zhao; Binhai Zhu (J. Comput. Biol., 2008)

Feedback Algorithm and Web-Server for Protein Structure Alignment. - Zhiyu Zhao; Bin Fu; Francisco J. Alanis; Christopher M. Summa (J. Comput. Biol., 2008)

Search Similar protein Structures with Classification, Sequence and 3D alignments. - Zaixin Lu; Zhiyu Zhao; Sergio García; Krishnakumar Krishnaswamy; Bin Fu (J. Bioinform. Comput. Biol., 2009)

Separating sublinear time computations by approximate diameter. - Bin Fu; Zhiyu Zhao (J. Comb. Optim., 2009)

O((logn)2) Time Online Approximation Schemes for Bin Packing and Subset Sum Problems. - Liang Ding; Bin Fu; Yunhui Fu; Zaixin Lu; Zhiyu Zhao (FAW, 2010)

Efficient protein alignment algorithm for protein search. - Zaixin Lu; Zhiyu Zhao; Bin Fu (BMC Bioinform., 2010)

SPATA: A highly accurate GUI tool for de novo transcriptome assembly. - Tin Chi Nguyen; Zhiyu Zhao; Dongxiao Zhu (BIBM Workshops, 2011)

SPATA: A seeding and patching algorithm for de novo transcriptome assembly. - Zhiyu Zhao; Tin Chi Nguyen; Nan Deng; Kristen Marie Johnson; Dongxiao Zhu (BIBM Workshops, 2011)

SAMMate: a GUI tool for processing short read alignments in SAM/BAM format. - Guorong Xu; Nan Deng; Zhiyu Zhao; Thair Judeh; Erik K. Flemington; Dongxiao Zhu (Source Code Biol. Medicine, 2011)

SPATA: A Seeding and Patching Algorithm for Hybrid Transcriptome Assembly. - Tin Chi Nguyen; Zhiyu Zhao; Dongxiao Zhu (CoRR, 2013)

On the approximability of the exemplar adjacency number problem for genomes with gene repetitions. - Zhixiang Chen 001; Bin Fu; Randy Goebel; Guohui Lin; Weitian Tong; Jinhui Xu 001; Boting Yang; Zhiyu Zhao; Binhai Zhu (Theor. Comput. Sci., 2014)

Design and Implementation of English Reading Examination System Based on WEB Platform. - Lan Guo; Zhiyu Zhao; Lu Bai; Jing Lv; Xin Zhao (Int. J. Emerg. Technol. Learn., 2017)

Data center network acquisition symptom algorithm based on Hamiltonian Cycle. - Xiaoyu Du 001; Zhiyu Zhao; Zhijie Han 001; Bo Wang (CIAT, 2020)

Multi-Scale Enhanced Active Learning for Skeleton-Based Action Recognition. - Yuhan Zhang; Zhiyu Zhao; Wen Li 001; Lixin Duan (ICME, 2021)

InternVideo-Ego4D: A Pack of Champion Solutions to Ego4D Challenges. - Guo Chen 006; Sen Xing; Zhe Chen 017; Yi Wang 074; Kunchang Li 002; Yizhuo Li 001; Yi Liu 081; Jiahao Wang; Yin-Dong Zheng; Bingkun Huang; Zhiyu Zhao; Junting Pan; et al. (CoRR, 2022)

InternVideo: General Video Foundation Models via Generative and Discriminative Learning. - Yi Wang 074; Kunchang Li 002; Yizhuo Li 001; Yinan He; Bingkun Huang; Zhiyu Zhao; Hongjie Zhang 002; Jilan Xu; Yi Liu 081; Zun Wang; Sen Xing; Guo Chen 006; et al. (CoRR, 2022)

VideoMAE V2: Scaling Video Masked Autoencoders with Dual Masking. - Limin Wang 002; Bingkun Huang; Zhiyu Zhao; Zhan Tong; Yinan He; Yi Wang 074; Yali Wang 001; Yu Qiao 001 (CVPR, 2023)

MGMAE: Motion Guided Masking for Video Masked Autoencoding. - Bingkun Huang; Zhiyu Zhao; Guozhen Zhang; Yu Qiao 001; Limin Wang 002 (ICCV, 2023)

Asymmetric Masked Distillation for Pre-Training Small Foundation Models. - Zhiyu Zhao; Bingkun Huang; Sen Xing; Gangshan Wu; Yu Qiao 001; Limin Wang 002 (CVPR, 2024)

The Trends and Research Progress of Mental Models in Interaction Design: A Bibliometric Study. - Yuqi Liu; Zhiyu Zhao (HCI (1), 2024)

The exploration and practice of bid document review and risk identification algorithm in power enterprise bidding. - Li Tang; Jie Du; Zhiyu Zhao; Haijun Li; Jin Jiang; Zhenqian Yang; Yuhang Zhou; Xingpei Chen; Xingyi Zhang 008 (ICCBD, 2024)

AWT: Transferring Vision-Language Models via Augmentation, Weighting, and Transportation. - Yuhan Zhu; Yuyang Ji; Zhiyu Zhao; Gangshan Wu; Limin Wang 002 (NeurIPS, 2024)

Learning Macroeconomic Policies based on Microfoundations: A Stackelberg Mean Field Game Approach. - Qirui Mi; Zhiyu Zhao; Siyu Xia; Yan Song 003; Jun Wang 012; Haifeng Zhang 002 (CoRR, 2024)

Correlated Mean Field Imitation Learning. - Zhiyu Zhao; Ning Yang 005; Xue Yan; Haifeng Zhang 002; Jun Wang 012; Yaodong Yang 001 (CoRR, 2024)

Braiding drive data processing through rote learning. - Bin Chen; Huan Xu; Qiuyong Yang; Zhiyu Zhao; Shaohua You (Intell. Decis. Technol., 2024)

GOLEM: Automated and Robust Cryo-EM-Guided Ligand Docking with Explicit Water Molecules. - Zhiyu Zhao; Emad Tajkhorshid (J. Chem. Inf. Model., 2024)

A 2nd-order noise-shaping SAR-assisted pipeline ADC with order-boosted gain-error-shaping. - Guolong Fu; Yanbo Zhang; Yan Wang; Zhiyu Zhao; Shubin Liu; Zhangming Zhu (Microelectron. J., 2024)

Extracting Photovoltaic Panels From Heterogeneous Remote Sensing Images With Spatial and Spectral Differences. - Zhiyu Zhao; Yunhao Chen; Kangning Li; Weizhen Ji; Hao Sun 003 (IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens., 2024)

Investigation and Practice on Brand Graphic Design for Waterfront Cities from the Perspective of Media Ecology. - Xianzhe Long; Zhiyu Zhao (HCI (65), 2025)

VI Design Model of City Brand Based on Hierarchical Communication. - Xi Shen; Zhiyu Zhao (HCI (66), 2025)

Visual Design Process in the Era of Artificial Intelligence: Research on the Design Framework of Human-AI Collaboration in Branding Design. - Hanting Zhang; Zhiyu Zhao (HCI (34), 2025)

Multimedia Interaction Design Model of Local Culture in Human-AI Collaborative Environment. - Zhiyu Zhao (HCI (35), 2025)

Mean Field Correlated Imitation Learning. - Zhiyu Zhao; Chengdong Ma; Qirui Mi; Ning Yang 005; Xue Yan; Mengyue Yang; Haifeng Zhang; Jun Wang 012; Yaodong Yang 001 (AAMAS, 2025)

Multi-scale interaction and locally enhanced bridging network for medical image segmentation. - Zhiyong Huang 004; Shiyao Zhou; Zhi Yu; Mingyang Hou; Zhiyu Zhao; Xiaoyu Li; Jiahong Wang; Yan Yan 022; Yushi Liu 001; Hans Gregersen (Comput. Medical Imaging Graph., 2025)

SCFMUNet: A fusion architecture based on multi-scale state space model and channel attention for medical image segmentation. - Zhiyong Huang 004; Zhiyu Zhao; Zhi Yu; Mingyang Hou; Shiyao Zhou; Jiahong Wang; Yan Yan 022; Yushi Liu 001; Hans Gregersen (Neural Networks, 2025)

An Exploration on Satellite Thermal Remote Sensing of Vegetation Water Stress With Two-Stage Trapezoid Model. - Guotao Ma; Zhiyu Zhao; Hao Sun 003; Wenjia Chen (IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens., 2025)

Vairiational Stochastic Games. - Zhiyu Zhao; Haifeng Zhang (CoRR, 2025)

MF-LLM: Simulating Collective Decision Dynamics via a Mean-Field Large Language Model Framework. - Qirui Mi; Mengyue Yang; Xiangning Yu 001; Zhiyu Zhao; Cheng Deng; Bo An 001; Haifeng Zhang; Xu Chen; Jun Wang 012 (CoRR, 2025)

Curious Causality-Seeking Agents Learn Meta Causal World. - Zhiyu Zhao; Haoxuan Li; Haifeng Zhang; Jun Wang; Francesco Faccio; Jürgen Schmidhuber; Mengyue Yang (CoRR, 2025)