A diameter path based method for important node detection in complex network. - Yuanyuan Sun 002; Yawen Guan; Zhizheng Wang; Tao Zhang; Cong Guo; Xinyao Li (IECON, 2017)

A Weak Supervised Learning Method for Essential Protein Detection Based on STRING Database and Learning Representation. - Zhizheng Wang; Yuanyuan Sun 002; Yawen Guan; Yibin Zhang; Liang Yang 003; Kan Xu; Yijia Zhang 001; Hongfei Lin (BIBM, 2018)

A Note on Graph-Based Nearest Neighbor Search. - Hongya Wang; Zhizheng Wang; Wei Wang 009; Yingyuan Xiao; Zeng Zhao; Kaixiang Yang (CoRR, 2020)

Hierarchical Link and Code: Efficient Similarity Search for Billion-Scale Image Sets. - Kaixiang Yang; Hongya Wang; Ming Du 002; Zhizheng Wang; Zongyuan Tan; Yingyuan Xiao (PG (Short Papers, Posters, and Work-in-Progress Papers), 2021)

Two Languages Are Better than One: Bilingual Enhancement for Chinese Named Entity Recognition. - Jinzhong Ning; Zhihao Yang; Zhizheng Wang; Yuanyuan Sun 002; Hongfei Lin; Jian Wang 021 (COLING, 2022)

A Semantic Network Encoder for Associated Fact Prediction. - Zhizheng Wang; Yuanyuan Sun 002; Xuyang Hu; Jiafeng Zhao; Zhihao Yang; Hongfei Lin (IEEE Trans. Knowl. Data Eng., 2022)

BCA: Bilinear Convolutional Neural Networks and Attention Networks for legal question answering. - Haiguang Zhang; Tongyue Zhang; Faxin Cao; Zhizheng Wang; Yuanyu Zhang; Yuanyuan Sun 002; Mark Anthony Vicente (AI Open, 2022)

OD-RTE: A One-Stage Object Detection Framework for Relational Triple Extraction. - Jinzhong Ning; Zhihao Yang; Yuanyuan Sun 002; Zhizheng Wang; Hongfei Lin (ACL (1), 2023)

ODEE: A One-Stage Object Detection Framework for Overlapping and Nested Event Extraction. - Jinzhong Ning; Zhihao Yang; Zhizheng Wang; Yuanyuan Sun 002; Hongfei Lin (IJCAI, 2023)

An efficient indexing technique for billion-scale nearest neighbor search. - Kaixiang Yang; Hongya Wang; Ming Du 002; Zhizheng Wang; Zongyuan Tan; Jie Zhang; Yingyuan Xiao (Multim. Tools Appl., 2023)

PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge. - Chih-Hsuan Wei; Alexis Allot; Po-Ting Lai; Robert Leaman; Shubo Tian; Ling Luo 001; Qiao Jin 001; Zhizheng Wang; Qingyu Chen 001; Zhiyong Lu (CoRR, 2024)

AgentMD: Empowering Language Agents for Risk Prediction with Large-Scale Clinical Tool Learning. - Qiao Jin 001; Zhizheng Wang; Yifan Yang 006; Qingqing Zhu; Donald Wright; Thomas Huang 003; W. John Wilbur; Zhe He 001; Andrew Taylor; Qingyu Chen 001; Zhiyong Lu (CoRR, 2024)

Decomposing Vision-based LLM Predictions for Auto-Evaluation with GPT-4. - Qingqing Zhu; Benjamin Hou; Tejas Sudharshan Mathai; Pritam Mukherjee; Qiao Jin 001; Xiuying Chen; Zhizheng Wang; Ruida Cheng; Ronald M. Summers; Zhiyong Lu (CoRR, 2024)

GeneAgent: Self-verification Language Agent for Gene Set Knowledge Discovery using Domain Databases. - Zhizheng Wang; Qiao Jin 001; Chih-Hsuan Wei; Shubo Tian; Po-Ting Lai; Qingqing Zhu; Chi-Ping Day; Christina Ross; Zhiyong Lu (CoRR, 2024)

Beyond Multiple-Choice Accuracy: Real-World Challenges of Implementing Large Language Models in Healthcare. - Yifan Yang 006; Qiao Jin 001; Qingqing Zhu; Zhizheng Wang; Francisco Erramuspe Álvarez; Nicholas Wan; Benjamin Hou; Zhiyong Lu (CoRR, 2024)

Demystifying Large Language Models for Medicine: A Primer. - Qiao Jin 001; Nicholas Wan; Robert Leaman; Shubo Tian; Zhizheng Wang; Yifan Yang 006; Zifeng Wang 008; Guangzhi Xiong; Po-Ting Lai; Qingqing Zhu; Benjamin Hou; Maame Sarfo-Gyamfi; et al. (CoRR, 2024)

Archive of PubTator 3.0 source code and trained models. - Chih-Hsuan Wei; Alexis Allot; Po-Ting Lai; Robert Leaman; Shubo Tian; Ling Luo 001; Qiao Jin 001; Zhizheng Wang; Qingyu Chen 001; Zhiyong Lu (Zenodo, 2024)

How well do multimodal LLMs interpret CT scans? An auto-evaluation framework for analyses. - Qingqing Zhu; Benjamin Hou; Tejas Sudharshan Mathai; Pritam Mukherjee; Qiao Jin 001; Xiuying Chen; Zhizheng Wang; Ruida Cheng; Ronald M. Summers; Zhiyong Lu (J. Biomed. Informatics, 2025)

Continual learning with high-order experience replay for dynamic network embedding. - Zhizheng Wang; Yuanyuan Sun 002; Xiaokun Zhang 001; Bo Xu 009; Zhihao Yang; Hongfei Lin (Pattern Recognit., 2025)

Temporal Network Embedding Enhanced With Long-Range Dynamics and Self-Supervised Learning. - Zhizheng Wang; Yuanyuan Sun 002; Zhihao Yang; Liang Yang 003; Hongfei Lin (IEEE Trans. Neural Networks Learn. Syst., 2025)

Knowledge-guided Contextual Gene Set Analysis Using Large Language Models. - Zhizheng Wang; Chi-Ping Day; Chih-Hsuan Wei; Qiao Jin 001; Robert Leaman; Yifan Yang 006; Shubo Tian; Aodong Qiu; Yin Fang; Qingqing Zhu; Xinghua Lu 001; Zhiyong Lu (CoRR, 2025)

Gene-R1: Reasoning with Data-Augmented Lightweight LLMs for Gene Set Analysis. - Zhizheng Wang; Yifan Yang 006; Qiao Jin 001; Zhiyong Lu (CoRR, 2025)

Rethinking contrastive learning in session-based recommendation. - Xiaokun Zhang 001; Bo Xu 009; Fenglong Ma; Zhizheng Wang; Liang Yang 003; Hongfei Lin (Pattern Recognit., 2026)