3D-GNOME: an integrated web service for structural modeling of the 3D genome. - Przemyslaw Szalaj; Paul J. Michalski; Przemyslaw Wróblewski; Zhonghui Tang; Michal Kadlof; Giovanni Mazzocco; Yijun Ruan; Dariusz Plewczynski (Nucleic Acids Res., 2016)

Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015. - Katie Wilkins; Mehedi Hassan; Margherita Francescatto; Jakob B. Jespersen; R. Gonzalo Parra; Bart Cuypers; Dan F. DeBlasio; Alexander Junge; Anupama Jigisha; Farzana Rahman; Griet Laenen; Sander Willems; et al. (BMC Bioinform., 2016)

3D-GNOME 2.0: a three-dimensional genome modeling engine for predicting structural variation-driven alterations of chromatin spatial structure in the human genome. - Michal Wlasnowolski; Michal Sadowski; Tymon Czarnota; Karolina Jodkowska; Przemyslaw Szalaj; Zhonghui Tang; Yijun Ruan; Dariusz Plewczynski (Nucleic Acids Res., 2020)

Spatial transcriptomics prediction from histology jointly through Transformer and graph neural networks. - Yuansong Zeng; Zhuoyi Wei; Weijiang Yu; Rui Yin; Yuchen Yuan; Bingling Li; Zhonghui Tang; Yutong Lu; Yuedong Yang (Briefings Bioinform., 2022)

Identifying influential spreaders in complex networks based on local and global structure. - Li Liang; Zhonghui Tang; Shicai Gong (J. Comput. Sci., 2024)

dSPG: A New Discriminant Superpixel Graph Regularizer and Convolutional Network for Hyperspectral Image Classification. - Long Yu; Jun Li 009; Lin He 001; Antonio Plaza; Lizhe Wang 001; Zhonghui Tang; Li Zhuo 002; Yuchen Yuan (IEEE Trans. Geosci. Remote. Sens., 2024)