GAADE: identification spatially variable genes based on adaptive graph attention network. - Tianjiao Zhang; Hao Sun; Zhenao Wu; Zhongqian Zhao; Xingjie Zhao; Hongfei Zhang; Bo Gao; Guohua Wang (Briefings Bioinform., 2024)

cfDiffusion: diffusion-based efficient generation of high quality scRNA-seq data with classifier-free guidance. - Tianjiao Zhang; Zhongqian Zhao; Jixiang Ren; Ziheng Zhang; Hongfei Zhang; Guohua Wang (Briefings Bioinform., 2024)

VGAE-CCI: variational graph autoencoder-based construction of 3D spatial cell-cell communication network. - Tianjiao Zhang; Xiang Zhang; Zhenao Wu; Jixiang Ren; Zhongqian Zhao; Hongfei Zhang; Guohua Wang; Tao Wang 082 (Briefings Bioinform., 2024)

KansformerEPI: a deep learning framework integrating KAN and transformer for predicting enhancer-promoter interactions. - Tianjiao Zhang; Saihong Shao; Hongfei Zhang; Zhongqian Zhao; Xingjie Zhao; Zhao-Xiang Zhang 001; Zhenxing Wang; Guohua Wang (Briefings Bioinform., 2025)