New insights from uncultivated genomes of the global human gut microbiome. - Stephen Nayfach; Zhou Jason Shi; Rekha Seshadri; Katherine S. Pollard; Nikos Kyrpides (Nat., 2019)

Scalable Microbial Strain Inference in Metagenomic Data Using StrainFacts. - Byron J. Smith; Xiangpeng Li; Zhou Jason Shi; Adam R. Abate; Katherine S. Pollard (Frontiers Bioinform., 2022)