A comprehensive review and evaluation of computational methods for identifying protein complexes from protein-protein interaction networks. - Zhourun Wu; Qing Liao 001; Bin Liu 014 (Briefings Bioinform., 2020)

idenPC-MIIP: identify protein complexes from weighted PPI networks using mutual important interacting partner relation. - Zhourun Wu; Qing Liao 001; Bin Liu 014 (Briefings Bioinform., 2021)

idenPC-CAP: Identify protein complexes from weighted RNA-protein heterogeneous interaction networks using co-assemble partner relation. - Zhourun Wu; Qing Liao 001; Shixi Fan; Bin Liu 014 (Briefings Bioinform., 2021)

iEnhancer-ELM: Improve Enhancer Identification by Extracting Multi-scale Contextual Information based on Enhancer Language Models. - Jiahao Li; Zhourun Wu; Wenhao Lin; Jiawei Luo; Jun Zhang 078; Qingcai Chen; Junjie Chen 004 (CoRR, 2022)

CFAGO: cross-fusion of network and attributes based on attention mechanism for protein function prediction. - Zhourun Wu; Mingyue Guo; Xiaopeng Jin; Junjie Chen 004; Bin Liu 014 (Bioinform., 2023)