A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D. - Anthony Santella; Zhuo Du; Sonja Nowotschin; Anna-Katerina Hadjantonakis; Zhirong Bao (BMC Bioinform., 2010)

A Semi-Local Neighborhood-based Framework for Probabilistic Cell Lineage Tracing. - Anthony Santella; Zhuo Du; Zhirong Bao (BMC Bioinform., 2014)

Digital development: a database of cell lineage differentiation in C. elegans with lineage phenotypes, cell-specific gene functions and a multiscale model. - Anthony Santella; Ismar Kovacevic; Laura A. Herndon; David H. Hall; Zhuo Du; Zhirong Bao (Nucleic Acids Res., 2016)