Modeling positional effects of regulatory sequences with spline transformations increases prediction accuracy of deep neural networks. - Ziga Avsec; Mohammadamin Barekatain; Jun Cheng 007; Julien Gagneur (Bioinform., 2018)

TF-MoDISco v0.4.4.2-alpha: Technical Note. - Avanti Shrikumar; Katherine Tian; Anna Shcherbina; Ziga Avsec; Abhimanyu Banerjee; Mahfuza Sharmin; Surag Nair; Anshul Kundaje (CoRR, 2018)

Predicting mean ribosome load for 5'UTR of any length using deep learning. - Alexander Karollus; Ziga Avsec; Julien Gagneur (PLoS Comput. Biol., 2021)