Heterogeneous Attributed Network Embedding with Graph Convolutional Networks. - Yueyang Wang; Ziheng Duan; Binbing Liao; Fei Wu 001; Yueting Zhuang (AAAI, 2019)

Multivariate Time Series Forecasting Based on Causal Inference with Transfer Entropy and Graph Neural Network. - Haoyan Xu; Yida Huang; Ziheng Duan; Jie Feng 006; Pengyu Song (CoRR, 2020)

Hierarchical and Fast Graph Similarity Computation via Graph Coarsening and Deep Graph Learning. - Haoyan Xu; Runjian Chen; Yunsheng Bai; Jie Feng 006; Ziheng Duan; Ke Luo; Yizhou Sun; Wei Wang 010 (CoRR, 2020)

Graph Partitioning and Graph Neural Network based Hierarchical Graph Matching for Graph Similarity Computation. - Haoyan Xu; Ziheng Duan; Jie Feng 006; Runjian Chen; Yida Huang; Yueyang Wang (CoRR, 2020)

Deep Learning Based Detection and Localization of Cerebal Aneurysms in Computed Tomography Angiography. - Ziheng Duan; Daniel Montes; Yangsibo Huang; Dufan Wu; Javier M. Romero; Ramon Gilberto Gonzalez; Quanzheng Li (CoRR, 2020)

Parallel Extraction of Long-term Trends and Short-term Fluctuation Framework for Multivariate Time Series Forecasting. - Haoyan Xu; Ziheng Duan; Yida Huang; Jie Feng 006; Anni Ren; Qianru Zhang; Pengyu Song; Xiaoqian Wang 001 (CoRR, 2020)

Modeling Complex Spatial Patterns with Temporal Features via Heterogenous Graph Embedding Networks. - Yida Huang; Haoyan Xu; Ziheng Duan; Anni Ren; Jie Feng 006; Qianru Zhang; Xiaoqian Wang 001 (CoRR, 2020)

Multivariate Time Series Classification with Hierarchical Variational Graph Pooling. - Haoyan Xu; Ziheng Duan; Yunsheng Bai; Yida Huang; Anni Ren; Qianru Yu; Qianru Zhang; Yueyang Wang; Xiaoqian Wang 001; Yizhou Sun; Wei Wang 010 (CoRR, 2020)

Connecting Latent ReLationships over Heterogeneous Attributed Network for Recommendation. - Ziheng Duan; Yueyang Wang; Weihao Ye; Zixuan Feng; Qilin Fan; Xiuhua Li (CoRR, 2021)

Total Scale: Face-to-Body Detail Reconstruction from Sparse RGBD Sensors. - Zheng Dong; Ke Xu 010; Ziheng Duan; Hujun Bao; Weiwei Xu; Rynson W. H. Lau (CoRR, 2021)

Graph partitioning and graph neural network based hierarchical graph matching for graph similarity computation. - Haoyan Xu; Ziheng Duan; Yueyang Wang; Jie Feng 006; Runjian Chen; Qianru Zhang; Zhongbin Xu (Neurocomputing, 2021)

Geometry-aware Two-scale PIFu Representation for Human Reconstruction. - Zheng Dong; Ke Xu 010; Ziheng Duan; Hujun Bao; Weiwei Xu; Rynson W. H. Lau (NeurIPS, 2022)

Connecting latent relationships over heterogeneous attributed network for recommendation. - Ziheng Duan; Yueyang Wang; Weihao Ye; Qilin Fan; Xiuhua Li (Appl. Intell., 2022)

Multivariate time-series classification with hierarchical variational graph pooling. - Ziheng Duan; Haoyan Xu; Yueyang Wang; Yida Huang; Anni Ren; Zhongbin Xu; Yizhou Sun; Wei Wang 010 (Neural Networks, 2022)

MTHetGNN: A heterogeneous graph embedding framework for multivariate time series forecasting. - Yueyang Wang; Ziheng Duan; Yida Huang; Haoyan Xu; Jie Feng 006; Anni Ren (Pattern Recognit. Lett., 2022)

Venus: An efficient virus infection detection and fusion site discovery method using single-cell and bulk RNA-seq data. - Cheyu Lee; Yuhang Chen; Ziheng Duan; Min Xu 009; Matthew J. Girgenti; Ke Xu 010; Mark Gerstein; Jing Zhang 062 (PLoS Comput. Biol., 2022)

iHerd: an integrative hierarchical graph representation learning framework to quantify network changes and prioritize risk genes in disease. - Ziheng Duan; Yi Dai; Ahyeon Hwang; Cheyu Lee; Kaichi Xie; Chutong Xiao; Min Xu 009; Matthew J. Girgenti; Jing Zhang 062 (PLoS Comput. Biol., 2023)

Understanding Transcriptional Regulatory Redundancy by Learnable Global Subset Perturbations. - Junhao Liu 001; Siwei Xu; Dylan Riffle; Ziheng Duan; Martin Renqiang Min; Jing Zhang 062 (ACML, 2024)

iHAST: Integrating Hybrid Attention for Super-Resolution in Spatial Transcriptomics. - Xi Li; Jing Zhang 062; Ziheng Duan; Yi Dai; Siwei Xu (BMVC, 2024)

iMIRACLE: An Iterative Multi-View Graph Neural Network to Model Intercellular Gene Regulation From Spatial Transcriptomic Data. - Ziheng Duan; Siwei Xu; Cheyu Lee; Dylan Riffle; Jing Zhang 062 (CIKM, 2024)

scENCORE: leveraging single-cell epigenetic data to predict chromatin conformation using graph embedding. - Ziheng Duan; Siwei Xu; Shushrruth Sai Srinivasan; Ahyeon Hwang; Cheyu Lee; Feng Yue; Mark Gerstein; Yu Luan; Matthew J. Girgenti; Jing Zhang 062 (Briefings Bioinform., 2024)

Nonlinear coupled vibration and control of roll system for twenty-high rolling mill. - Dongping He; Ziheng Duan; Huidong Xu; Xianglan Kong; Yuanming Liu; Tao Wang (Math. Comput. Simul., 2025)