CHARTS: a web application for characterizing and comparing tumor subpopulations in publicly available single-cell RNA-seq data sets. - Matthew N. Bernstein; Zijian Ni; Michael Collins; Mark E. Burkard; Christina Kendziorski; Ron M. Stewart (BMC Bioinform., 2021)

Normalization by distributional resampling of high throughput single-cell RNA-sequencing data. - Jared Brown; Zijian Ni; Chitrasen Mohanty; Rhonda Bacher; Christina Kendziorski (Bioinform., 2021)

Progressive Horizon Learning: Adaptive Long Term Optimization for Personalized Recommendation. - Congrui Yi; David Zumwalt; Zijian Ni; Shreya Chakrabarti (RecSys, 2023)

Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models. - Robert J. Millikin; Kalpana Raja; John W. Steill; Cannon Lock; Xuancheng Tu; Ian Ross; Lam C. Tsoi; Finn Kuusisto; Zijian Ni; Miron Livny; Brian Bockelman; James A. Thomson; et al. (BMC Bioinform., 2023)