Viral quasispecies reconstruction via tensor factorization. - Soyeon Ahn; Ziqi Ke; Haris Vikalo (Allerton, 2017)

Viral quasispecies reconstruction via tensor factorization with successive read removal. - Soyeon Ahn; Ziqi Ke; Haris Vikalo (Bioinform., 2018)

A Graph Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction. - Ziqi Ke; Haris Vikalo (AAAI, 2020)

A Convolutional Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction. - Ziqi Ke; Haris Vikalo (NeurIPS, 2020)

Real-Time Radio Modulation Classification With An LSTM Auto-Encoder. - Ziqi Ke; Haris Vikalo (ICASSP, 2021)

Deep learning for assembly of haplotypes and viral quasispecies from short and long sequencing reads. - Ziqi Ke; Haris Vikalo (BCB, 2022)

Real-Time Radio Technology and Modulation Classification via an LSTM Auto-Encoder. - Ziqi Ke; Haris Vikalo (IEEE Trans. Wirel. Commun., 2022)

Graph-Based Reconstruction and Analysis of Disease Transmission Networks Using Viral Genomic Data. - Ziqi Ke; Haris Vikalo (J. Comput. Biol., 2023)