Med-BERT: pre-trained contextualized embeddings on large-scale structured electronic health records for disease prediction. - Laila Rasmy; Yang Xiang 003; Ziqian Xie; Cui Tao; Degui Zhi (CoRR, 2020)

Generalizable Gated Recurrent Neural Network based model to predict COVID-19 patient outcomes on admission. - Laila Rasmy; Bijun S. Kannadath; Masayuki Nigo; Ziqian Xie; Bingyu Mao; Khush A. Patel; Yujia Zhou 003; Xiao Dong; Hua Xu 001; Degui Zhi (AMIA, 2021)

CovRNN: predicting outcomes of COVID-19 patients on admission using their electronic health records with minimal data processing. - Laila Rasmy; Masayuki Nigo; Bijun S. Kannadath; Ziqian Xie; Bingyu Mao; Khush A. Patel; Wanheng Zhang; Yujia Zhou 003; Angela Ross; Hua Xu 001; Degui Zhi (AMIA, 2021)

Med-BERT: pretrained contextualized embeddings on large-scale structured electronic health records for disease prediction. - Laila Rasmy; Yang Xiang 003; Ziqian Xie; Cui Tao; Degui Zhi (npj Digit. Medicine, 2021)

PK-RNN-V E: A deep learning model approach to vancomycin therapeutic drug monitoring using electronic health record data. - Masayuki Nigo; Hong Thoai Nga Tran; Ziqian Xie; Han Feng; Bingyu Mao; Laila Rasmy; Hongyu Miao 001; Degui Zhi (J. Biomed. Informatics, 2022)

Less is More: Reducing Overfitting in Deep Learning for EEG Classification. - Songchi Zhou; Shijia Geng; Jun Li; Deyun Zhang; Ziqian Xie; Chuandong Cheng; Shenda Hong (CinC, 2023)

A Deep-Learning-based Two-Compartment Predictive Model (PKRNN-2CM) for Vancomycin Therapeutic Drug Monitoring. - Bingyu Mao; Ziqian Xie; Laila Rasmy; Masayuki Nigo; Degui Zhi (ICHI, 2023)

Training Recurrent Neural Network-Based Model to Predict COVID-19 Patient Risk for PASC using Pytorch_EHR - Hands-on Tutorial on N3C. - Laila Rasmy; Ziqian Xie; Degui Zhi (ICHI, 2023)

Dissecting Query-Key Interaction in Vision Transformers. - Xu Pan; Aaron Philip; Ziqian Xie; Odelia Schwartz (NeurIPS, 2024)

Genetic InfoMax: Exploring Mutual Information Maximization in High-Dimensional Imaging Genetics Studies. - Yaochen Xie; Ziqian Xie; Sheikh Muhammad Saiful Islam; Degui Zhi; Shuiwang Ji (Trans. Mach. Learn. Res., 2024)

Language Models for Controllable DNA Sequence Design. - Xingyu Su; Xiner Li; Yuchao Lin; Ziqian Xie; Degui Zhi; Shuiwang Ji (CoRR, 2025)