Characterizing Secretion System Effector Proteins With Structure-Aware Graph Neural Networks and Pre-Trained Language Models. - Zixu Ran; Cong Wang 044; Heyun Sun; Shirui Pan; Fuyi Li (IEEE J. Biomed. Health Informatics, 2024)

Kinase-inhibitor binding affinity prediction with pretrained graph encoder and language model. - Xudong Guo; Zixu Ran; Fuyi Li (Briefings Bioinform., 2025)